Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00260 ATGGCTTCAGTTGGTGCACTCAAATTCTTGTTGTTCCAAGTTCTATGGCTCTGGAACTTTCTACCTTCTTGCCAAGGTGATAAGCAGTGGCATGAAAAAAGTTACCCTTTTATCAGAAATGCAAGCTCATTTTCATCACCATCAATTTCAACAACCACATCCAGCAATGTGTATGACTACATAATAGTTGGAGGTGGCACAGCAGGGTGCCCTTTGGCTGCAACCCTCTCTCAGAAGTTCAATGTTCTGATGCTTGAAAGAGGAGGTGTTCCCTTCACCAACCCTAATGTTTCATATCTTGAGAACTTCCACATTACCTTGGCAGATGTTTCACCAACTTCAGCTTCTCAATTCTTCGTTTCATCTGATGGAGTCTACAATTCAAGGGCCAGGATCTTAGGAGGTGGCAGTTCTATCAACGCTGGTTTCTACACCAGAGCAGATCCAAGGTTTATAAAGAAGGTGGGATGGGATATCAACCTAGTGAATCAGTCATATCCATGGATTGAAAACCAAATTGTTCACCGTCCAAAGTTTTCAGCATATCAAAGGGCAGTGAGGGACAGTCTTCTGGACTCTGGTGTGTCACCTTTCAATGGCTTCACCTATGATCATCTCTATGGAACAAAAGTTGGTGGAACCATTTTTGACAAATATGGCCGGCGCCACACAGCTGCTGAACTGCTTGCTTCAGGAAACCATGAAAAACTTACTGTTTTGGTCTATGCCACTGTCCAAAAGATTGTGTTTGATACAAAAGGAAAGAAACCAAAAGCTGTGGGGGTTATTTTCCAAGATGAGAATGGGAAACAGCATGAAGCTGTTCTGGCAAATGATAGGCATAGTGAAGTGATAATGTCTTCTGGTGCAATTGGGACTCCTCAACTGCTGATGCTTAGTGGAATTGGACCAAAAGAACAACTCCAGAAGTTTAACATCCCAGTGATCCTCGACAACCACTTTGTTGGAAAAGGAATGGTAGACAATCCCATGAACACAATGTTTGTTCCTTCTGAAAGACCTGTTCATCAGTCACTCATAGAAACTGTTGGAATCACCAAGATGGGCGTGTACATTGAGGCTAGCAGTGGGTTTAGCCAGTCTAATGATAGCATTCATTGCCATCATGGTATTGTGTCAGCAGAGATTGGGCAGCTTTCCACGATCCCTCCTAAGCAAAGATCACCAGAAGCTATCAAAGAATTTATCAAGAACAAGAAAGACCTACCGATTGAAGCATTTAAGGGAGGCTTTATTCTGTCAAAAGTTGCCAATCCTTGGTCAGTTGGTGAGCTCAAGCTGGTCAACACCAATGTGAATGGCAATCCATCTGTTGCCTTCAACTACTTCAGCCATCCATATGATCTTGAGCGCTGTGTTAAGGGGATCCGTTTGGCCATTAAGGTTGTCCAGTCAAAACATTTCACAAACTACACTTTGTGTGACAGAAAAACATCAGAGGAGCTCCTCAACCTCACTGTGAAGGCTAATGTCAACTTCATACCCAAGCATGCCAAAGACACAAAGTCACTAAAGCAATTCTGCAAAGACACTGTGATCACAATTTGGCACTACCATGGAGGGTGCCATGTGGGGAAGGTAGTCAATCCTGATTACATGGTCCTCGGTGTTGACAGACTCCGTGTGGTAGATGGCTCAACATTTGATGAATCACCAGGAACAAATCCTCAAGCCACTGTCATGATGATGGGCAGGTACGTACATGGGACTGAAGATTTTGAGAGACAGGTTGGGGAAATTGGCAGGAACAATGGAAAAATCATTCTGGATGTTTACATACTTGATAAATACTAG 1815 0.4331 MASVGALKFLLFQVLWLWNFLPSCQGDKQWHEKSYPFIRNASSFSSPSISTTTSSNVYDYIIVGGGTAGCPLAATLSQKFNVLMLERGGVPFTNPNVSYLENFHITLADVSPTSASQFFVSSDGVYNSRARILGGGSSINAGFYTRADPRFIKKVGWDINLVNQSYPWIENQIVHRPKFSAYQRAVRDSLLDSGVSPFNGFTYDHLYGTKVGGTIFDKYGRRHTAAELLASGNHEKLTVLVYATVQKIVFDTKGKKPKAVGVIFQDENGKQHEAVLANDRHSEVIMSSGAIGTPQLLMLSGIGPKEQLQKFNIPVILDNHFVGKGMVDNPMNTMFVPSERPVHQSLIETVGITKMGVYIEASSGFSQSNDSIHCHHGIVSAEIGQLSTIPPKQRSPEAIKEFIKNKKDLPIEAFKGGFILSKVANPWSVGELKLVNTNVNGNPSVAFNYFSHPYDLERCVKGIRLAIKVVQSKHFTNYTLCDRKTSEELLNLTVKANVNFIPKHAKDTKSLKQFCKDTVITIWHYHGGCHVGKVVNPDYMVLGVDRLRVVDGSTFDESPGTNPQATVMMMGRYVHGTEDFERQVGEIGRNNGKIILDVYILDKY 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00260 604 ProSitePatterns GMC oxidoreductases signature 2. 289 303 IPR000172 GO:0016614|GO:0050660
Vian9g00260 604 Pfam GMC oxidoreductase 426 572 IPR007867 GO:0016614
Vian9g00260 604 Gene3D - 58 571 IPR036188 -
Vian9g00260 604 PANTHER OSJNBA0019K04.7 PROTEIN 20 574 - -
Vian9g00260 604 Gene3D - 175 521 - -
Vian9g00260 604 PIRSF Alcohol_oxidase 38 575 IPR012132 GO:0050660
Vian9g00260 604 Pfam GMC oxidoreductase 58 150 IPR000172 GO:0016614|GO:0050660
Vian9g00260 604 Pfam GMC oxidoreductase 218 330 IPR000172 GO:0016614|GO:0050660
Vian9g00260 604 SUPERFAMILY FAD-linked reductases, C-terminal domain 326 528 - -
Vian9g00260 604 SUPERFAMILY FAD/NAD(P)-binding domain 50 573 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00260 Vian-Chr9 2351743 2357309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00260 12 584 Miscellaneous Gene Families AT5G51950 48.893 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00260 K15403 - gmx:100788704 1038.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00236 11 2294456 2300166 Vian9g00260 9 2351743 2357309 PCT