Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00259 ATGGCGGATAGAGAGTCTTGTTGTTCAACTCAGCTTATTGACGGAGATGGTGTATTCAATGTTTCTGGGGTTGAAAACTTTATGAAGGAGGTGAAGTTGGCTGAATGTGGGCTTTCGTATGCTGTAGTTTCTATAATGGGTCCACAAAGTAGTGGCAAGAGCACACTATTAAATAATTTGTTCGGTACCAACTTCAGAGAGATGGATGCTTTCAAGGGAAGGTCTCAAACAACCAAAGGAATCTGGATGGCTAGATGCAATGGCATAGAGCCTTGTACACTTGTTATGGATTTGGAGGGTACTGATGGAAGAGAACGCGGAGAGGATGACACTGCTTTTGAAAAGCAGAGTGCTTTATTTGCTCTTGCTGTATCGGATATTGTGTTAATAAACATGTGGTGCCATGACATTGGTCGTGAGCAAGCTGCAAATAAGCCACTTTTAAAAACCGTCTTTCAAGTCATGATGAGATTGTTTAGTCCACGAAAAACAACACTGTTGTTTGTCATACGTGATAAAACAAGGACGCCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAGATATGGGATTCTGTTCCTAAACCACAGGCCCACAAGGAAACCCCATTAAGTGAATTTTTCAACGTTGAAGTTGTTGCGCTTTCTAGTTATGAAGAAAAGGAAGAGCAATTTAGAGAGCAGGTTGCCAGTTTGCGGCAACGATTCCATCATTCCATTGCTCCTGGGGGGCTTGCAGGGGATCGGCGTGGAGTAGTTCCTGCTTCTGGATTTTCATTTAGTTGTCAGGAAATATGGAAAGTCATTAAGGAGAACAAAGATCTCGACCTTCCTGCACATAAGGTTATGGTTGCTACTGTACGATGTGAAGAAATCACCGATGAGAAATATGCCTCTTTTTCTGCAAATGAGGATTGGTGTCAATTGGAAGAGGCTGTGCAATCTGGCCCTGTTCCTGGATTTGGAAGAAAGCTCAGTTCACTCCTTGGTACTTGTTTATCAGAGTATGATGCTGAAGCCGCCTTTTTTGATGAAGGTGTGAGAACTGCCAAACAAAAGCAACTACAAGAAAAATTGTTCCAACTTGTCCATCCTGCATTCCAATCTGCGTTGGGACATATAAGATCTGGAACTTTGGATAAATTCAAGGTGGTATTTGACAAGGCTTTGAATGGTGGGGAAGGGTTTTCTGAGGCTGCTAGGAAATGCAGTGAGTTTTGTATGGTTCAATTTGACGAAGCATGTGCAGATATTGTTATCGAACAAGCAAACTGGGATACATCTAAAGTGCGAGAGAAATTGCTGCGGGACATTGATGCACATATTGCAGCTGTGCGTGCAACCAAGATTTCTGAACTTACTTCATTATATGAGGAAAAAGTTAAACAAGCTTTGTGTGGACCTGTGGAAGCTCTTTTGGACGGAGCTAATAGTGAGACTTGGTCATCAATAAGGAACCTTCTTAGGCGTGAGACTTTATCAGCTGTTTCAGGGTTCTCTGCTGCACTTATTGGGTTTGATATGGATGAAGAAACAAGACAGAAAATGCTTAAAAGTTTAGAGGATTATGCAAGAGGTCTGGTAGAAGGAAAGGCTAAGGAAGAAGTAGGAAGAGTTCTAATCCGCATGAAGGATAGGTTTACAATGTTGTTTAGTCATGATGCTGATTCAATGCCTCGTGTTTGGACTGGTAAAGAAGATATACGATCCATCACCAAGACTGCCCGATCTGCTTCTTTGAAGTTGCTATCTGTCATGGCTGCAATCCGTTTGGATGATGATGACACTGACACTATTGAGAAAGTGTTAGCAGTCGCATTGGTGGAACCATCACCAAGCAGTAATGGTACGAGGAGCATGACAGTGGTTGATCCACTAGCTTCTAGCAGCTGGGAAGAGGTTTCGTCCTCTAAAACATTGATTACGCCTGTCCAGTGCAAGTCTTTGTGGAGGCAATTCAGGACAGAGACAGAGTACACTGTCTCTCAAGCCATTGCTGCACAGGAAGCAAGCAAGCGCAACAACAACTGGTTACCTCCCCCTTGGGCGATAGCTGCTATGGTTATCCTAGGATTTAATGAATTTATGACACTTCTAAGAAATCCCTTGTATTTGGGTGTCATCTTTGTTGGTTATCTTCTTATTAAAGCTCTATGGGTGCAACTTGACATTTCGGGCGAATTTCGCAATGGAGCCCTTCCGGCAATCATTTCCTTGTCTACCAAGTTTGTTCCAACTATCATGAACCTTATGAAAAAACTAGCAGAAGAGGGACAGAACCATGCAGCTAACAATCCTCAGAGAACCCCATCAAAAAACAGTAACGGTGATAGTCACGCCGTCTCGTCGAGCGCCTCATCTAACCTGACTGCATTGGACAACGGAACGGAGTATGAGGGCCCAGTTAAAGATGAGTAG 2427 0.4293 MADRESCCSTQLIDGDGVFNVSGVENFMKEVKLAECGLSYAVVSIMGPQSSGKSTLLNNLFGTNFREMDAFKGRSQTTKGIWMARCNGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKETPLSEFFNVEVVALSSYEEKEEQFREQVASLRQRFHHSIAPGGLAGDRRGVVPASGFSFSCQEIWKVIKENKDLDLPAHKVMVATVRCEEITDEKYASFSANEDWCQLEEAVQSGPVPGFGRKLSSLLGTCLSEYDAEAAFFDEGVRTAKQKQLQEKLFQLVHPAFQSALGHIRSGTLDKFKVVFDKALNGGEGFSEAARKCSEFCMVQFDEACADIVIEQANWDTSKVREKLLRDIDAHIAAVRATKISELTSLYEEKVKQALCGPVEALLDGANSETWSSIRNLLRRETLSAVSGFSAALIGFDMDEETRQKMLKSLEDYARGLVEGKAKEEVGRVLIRMKDRFTMLFSHDADSMPRVWTGKEDIRSITKTARSASLKLLSVMAAIRLDDDDTDTIEKVLAVALVEPSPSSNGTRSMTVVDPLASSSWEEVSSSKTLITPVQCKSLWRQFRTETEYTVSQAIAAQEASKRNNNWLPPPWAIAAMVILGFNEFMTLLRNPLYLGVIFVGYLLIKALWVQLDISGEFRNGALPAIISLSTKFVPTIMNLMKKLAEEGQNHAANNPQRTPSKNSNGDSHAVSSSASSNLTALDNGTEYEGPVKDE 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00259 808 PANTHER PROTEIN SEY1 5 778 IPR008803 -
Vian9g00259 808 FunFam Protein ROOT HAIR DEFECTIVE 3 homolog 18 273 - -
Vian9g00259 808 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Vian9g00259 808 Coils Coil 218 238 - -
Vian9g00259 808 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Vian9g00259 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 277 IPR027417 -
Vian9g00259 808 CDD GBP 36 239 - -
Vian9g00259 808 MobiDBLite consensus disorder prediction 763 797 - -
Vian9g00259 808 Hamap Protein SEY1 [SEY1]. 9 765 IPR008803 -
Vian9g00259 808 Gene3D - 20 248 IPR027417 -
Vian9g00259 808 Pfam Sey1 three-helix bundle domain 323 760 IPR046758 -
Vian9g00259 808 MobiDBLite consensus disorder prediction 762 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00259 Vian-Chr9 2331146 2345857 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00259 K22698 - gmx:100777656 1426.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00234 11 2274211 2282466 Vian9g00259 9 2331146 2345857 PCT