Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00110 ATGTTATCTAATAAGTCCAAAATTAGCACAAGCCCTAAACACTCGCTCTGGGTGCTGAAGATTTGCACAACAATCCGCATAAAGCGAGCAAAAAAGGGCATGGAGGTCTTGCACTTGCACCGCGTGCTCCCCATACCTGTTCCTCAAAACTCCATCTTTTGGCGTTCAACTGCTACCCAATTAACCAAAATTCCCATTGCAAGGCCGCCATTGCTTCGGAAATCAGCACCCACATCGCAAACTTGCACTGCCAGAGCAGGGTGGTTTTTGGGTCTTGGAGCAGATACCATGAAGACAAATTTACCTGACACTGTCAAAGCCGGTGACCCTGTTCTGCACGAGCCTGCTCGGGAAGTTGATCCCAATGAGATAAAGTCGGAGAAAGTGCAGAATATCATTGATGACATGATTCGGGTCATGAGGAAGGCTCCTGGAGTTGGTCTAGCTGCTCCCCAGATTGGAATTCCTTTCAGGATAATTGTTTTGGAAGATACCAAAGCGTATATTAGTTATGTCCCGAAGGAAGAGGCTAAAGTCCAAGATAGAAGACCTTTTGATCTTTTGGTCATCCTGAATCCCAAGCTAGAGAAGAAGAGCAAGAAGACTGCTCTATTTTTTGAAGGGTGTTTGAGTGTTGATGGGTTTAGAGCACTGGTGGAGCGATCCCTTGAGGTTGAGGTTACAGGTTTGGATCGCTATGGTGCACCAATCAAAATAAGCGCTTCTGGCTGGCAGGCCCGGATTTTACAACATGAGTGTGATCACTTGGATGGAACTCTGTATGTTGATAAGATGGTACCTAGAACTTTCAGAACTGTGGACAACCTTGACCTGCCTCTTGCTCAGGGGTGTCCCAAACTTGGCCCTCGCTAA 873 0.4674 MLSNKSKISTSPKHSLWVLKICTTIRIKRAKKGMEVLHLHRVLPIPVPQNSIFWRSTATQLTKIPIARPPLLRKSAPTSQTCTARAGWFLGLGADTMKTNLPDTVKAGDPVLHEPAREVDPNEIKSEKVQNIIDDMIRVMRKAPGVGLAAPQIGIPFRIIVLEDTKAYISYVPKEEAKVQDRRPFDLLVILNPKLEKKSKKTALFFEGCLSVDGFRALVERSLEVEVTGLDRYGAPIKISASGWQARILQHECDHLDGTLYVDKMVPRTFRTVDNLDLPLAQGCPKLGPR 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00110 290 PRINTS Peptide deformylase signature 238 267 IPR023635 GO:0042586
Vian9g00110 290 PRINTS Peptide deformylase signature 134 163 IPR023635 GO:0042586
Vian9g00110 290 PRINTS Peptide deformylase signature 207 218 IPR023635 GO:0042586
Vian9g00110 290 PRINTS Peptide deformylase signature 219 237 IPR023635 GO:0042586
Vian9g00110 290 Hamap Peptide deformylase [def]. 100 276 IPR023635 GO:0042586
Vian9g00110 290 Gene3D Peptide deformylase 100 289 IPR036821 -
Vian9g00110 290 SUPERFAMILY Peptide deformylase 101 272 IPR036821 -
Vian9g00110 290 PANTHER PEPTIDE DEFORMYLASE 97 284 IPR023635 GO:0042586
Vian9g00110 290 FunFam Peptide deformylase 101 284 - -
Vian9g00110 290 NCBIfam peptide deformylase 105 267 IPR023635 GO:0042586
Vian9g00110 290 Pfam Polypeptide deformylase 105 268 IPR023635 GO:0042586
Vian9g00110 290 CDD Pep_deformylase 105 261 IPR023635 GO:0042586
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00110 Vian-Chr9 866766 869228 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00110 K01462 - gmx:100784292 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00110 9 866766 869228 Vian9g00110 9 866766 869228 ECH
Vian11g00108 11 926451 928612 Vian9g00110 9 866766 869228 PCT