Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00108 ATGGAAGCCGTGCAGCTGGTGGCATTGCGGCTGCGCGCAGTTCCGGTGGCGGCATACCTCTTTCGAAACGCCGTCGTAATGGGCGGCGTCTTCCGCAGCAGCAACAGCACCACCAGCACGAGCATGAGCGGAATGGCAGGGAAGAGGATGAGCTCTGGTTCGGGATGGTTGATGGGCGGAGCATTGAAGTTACCGAAAATTGTGAAAGCCGGAGAGCCGGTTCTGCACGAGCGAGCCAAAGAAGTTGATCCGTCGGAGATGAAATCGGAGAGAGTGCAGAAGATCATCGACGACATGATCCGCGTCATGCGAAAGGCACCTGGAGTTGGCCTCGCCGCTCCACAGATTGGAATTCCCCTAAGGATAATTGTTTTGGAAGATAAAGAGGAGTATATGGGTTATGACGATGAGGAATCCCTCAAAGAACAAGATAGAAGACCTTTTCATCTTTTGGTGATATTGAATCCTAAGCTCAAGAAGAAGACCAACAGGACTGCACTCTTTTTTGAAGGATGTTTGAGTGTTGCTGGGTACGCTGTGGTAGAGCGATACCTTGATGTTGAGGTTGAAGGTTTTGATCGTTACGGGGAACCCGTAAAAATAAATGCTACTGGTTGGCAGGCTCGGATTTTACAGCATGAGTGTGATCACTTGGATGGAACACTGTATGTTGATAAGATGGTACCTAGAACATTCAGAGCTCCAGAAAACAGTTCTAAGCCTCTTGCCCGTGGGTGCCCAAAACTTGGTCCTCGCTGA 759 0.5007 MEAVQLVALRLRAVPVAAYLFRNAVVMGGVFRSSNSTTSTSMSGMAGKRMSSGSGWLMGGALKLPKIVKAGEPVLHERAKEVDPSEMKSERVQKIIDDMIRVMRKAPGVGLAAPQIGIPLRIIVLEDKEEYMGYDDEESLKEQDRRPFHLLVILNPKLKKKTNRTALFFEGCLSVAGYAVVERYLDVEVEGFDRYGEPVKINATGWQARILQHECDHLDGTLYVDKMVPRTFRAPENSSKPLARGCPKLGPR 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00108 252 PRINTS Peptide deformylase signature 170 181 IPR023635 GO:0042586
Vian11g00108 252 PRINTS Peptide deformylase signature 200 229 IPR023635 GO:0042586
Vian11g00108 252 PRINTS Peptide deformylase signature 97 126 IPR023635 GO:0042586
Vian11g00108 252 NCBIfam peptide deformylase 66 230 IPR023635 GO:0042586
Vian11g00108 252 Gene3D Peptide deformylase 62 251 IPR036821 -
Vian11g00108 252 PANTHER PEPTIDE DEFORMYLASE 63 245 IPR023635 GO:0042586
Vian11g00108 252 SUPERFAMILY Peptide deformylase 64 235 IPR036821 -
Vian11g00108 252 CDD Pep_deformylase 67 223 IPR023635 GO:0042586
Vian11g00108 252 Hamap Peptide deformylase [def]. 63 242 IPR023635 GO:0042586
Vian11g00108 252 FunFam Peptide deformylase 64 246 - -
Vian11g00108 252 Pfam Polypeptide deformylase 66 230 IPR023635 GO:0042586
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00108 Vian-Chr11 926451 928612 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00108 K01462 - gmx:100306710 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00108 11 926451 928612 Vian11g00108 11 926451 928612 ECH
Vian11g00108 11 926451 928612 Vian9g00110 9 866766 869228 PCT