Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01477 ATGGCGTTCTCTAATGCTTACAAACTATCAGAATTTTCTTTCTCAGCACTCAATCCTCCTTCTCCTCCTTATCGTTCTTTCCACAAATTCCCATTTCGCACACTCACCTTCGCTTCTCTCCCAACCCCTAAATCTAACGTGTCTGCACCCTGGCTAACCAAATCACCTTCTCCCAAAAAGGTCACCGAATCCCTCACTGCCGACGACCCAATTCACCGGACAACCCCAAAACAACCGCAGAACGCCGTCGAGAGGATCGTCCTTCGGTTGCGCAACTTGGGTCTGCCTTCAGAAGAAGAAGAGCAACAAGAACAACAGGAAGAACTTCCGGCAAGTAGTACGGCGACAGTGACCGGAGATGAGAGGCTGAGCGAGTTGCTCCGGCGGGAGTGGGTTCGGCCGGACGTTGGACTGGTGGGCGAGGATGGGGAGGATGAGATGATGCTGCCGTGGGAGAGGGAGGAGGAGAAGGTAGTTGTGGTTGGGAGTGGAAGGGATGAAGAAGGGTTGAAAAAGAGGAGGGTTACGGCTCCTAGTTTGGCTGATTTGACCCTTGAGGATGAGTTGCTGAGGAGGTTGAGGAGAGAGGGGATGCGTGTGAGGGAGAGGGTGAGTGTTCCCAAGGCCGGACTCACTCAGGAGGTGATGGAGAAGATTCATAAGAGGTGGATGAAGGAAGAATTGGTGAGGCTCAAGTTTCACGAGGAACTTGCAAAGGATATGAGGAAGGCTCATGAGATTGTTGAGCGTCGAACTGGAGGATTGGTTACATGGAGGGCAGGGAGTGTTATGATGGTGTATCGTGGTATTGATTACCAAGGGCCTGACTCGAGGAAGGAAGTTAATGACAAGAAAGGTAATGACTTTTTTGTGCCTGATGTCTCATCAGGAAGTTTGTTGAAAAGTGAAGTCAGTAATGCAGTGTCATCTCTAGAAAAGAATGACGTGATGGAGAGGGAGCAAGAACAGTCTAAGAATGTGACTGAGGCGGAAGCAGAGTACAATGCACTTCTTGATGAATTAGGTCCCCGTTTTGTTGGATGGTGGGGTACGGGGATACTTCCTGTTGATGCTGATTTATTTCCAAGAACCGTTCCAGGTTACAAAACACCGTTTAGGCTTCTTCCTACAGGAATGCGTTCTCGGCTAACAAATGCAGAGATGACCAATTTAAGGAAACTTGCAAAATCACTTCCTTGTCATTTTGCCTTAGGGAGAAATAGAAATCACCAAGGTCTAGCATGTGCTATTCTTAAGCTTTGGGAGAAAAGTTTAGTTGTAAAGATTGCTGTCAAACCTGGCATCCAGAACACAAACAATGAACTGATGTCTGAGGAGCTGAAGATGTTAACAGGAGGTACCTTGCTGCTAAGGAATAAATATTTCATTGTTATATACCGTGGGAAAGACTTCGTTCCAACAAGTGTGGCTACTGTTTTAGCTGAAAGAGAGGAAATGACAAAGCAAGTACAGGATGTTGAAGACAAGTTCCGGTGCAGAGCAGTTGATGCAATTCCATCAGGGAAAGGTGAAGCAACAGCACAGGCTGGGACTCTAGCAGAGTTCTACGTGGCCCAGGCTCGATGGGGAAGGGAAATATCTCCTGAAGAACGGGAGAAGATGGTGGAAGAAGCTGCCAAAGCCAAGACTGCTAAGCTTGTCAGAAAAATTGAACATAAACTATTTTTAGCCCAGACCAAAAAGCATAGAGCAGAAAGGATCTTAGCTAAAATAGAAGCGTCGATGGTTCCAGCTGGTCCTGATTATGACCAGGAAACAATCACAGATGAAGAACGTGTTATGTTCCGTAAAGTTGGTTTAAGAATGAAACCATACTTACCACTTGGCATACGTGGTGTTTTTGATGGTGTTGTCGAGAATATGCATTTGCATTGGAAACACCGAGAACTTGTAAAATTGATGACAAAACAAAAGACTCTTGCTTTTGTGGAAGACACAGCAAGGTTACTTGAATATGAGAGTGGTGGAATACTGGTTGCAATAGAAAAAGTTTCCAAAGAATTTGCTCTTATTTACTATCGTGGAAAGAATTACAAGCGGCCAATTAATCTAAGGCCAAGAAACCTTCTAACGAAGGGAAAGGCACTAAAGCGACATGTAGCCATGCAACGACACGAGGCTCTGAGTCAGCATATTACTGAACTGGAAAAAACTATAGAACAATTGAAAAAAGAACTTGATAAGCCTCAAGACTTGGAAGATGAAGATGGGGCCAGCGCAGAGGAAGAGGATCTTAACCAAATAGACAACATCTCAGAATTGACCCTAAGTGAAAATGAAGATTCTGATGGTTTTGATGATGAGGAAGAAAGTGACTGGTTAGATGATGGGGAAGAAAGTGATTGGGAAGATGATGAAGACCCGAGTTTTCCAAATTCATAA 2403 0.4511 MAFSNAYKLSEFSFSALNPPSPPYRSFHKFPFRTLTFASLPTPKSNVSAPWLTKSPSPKKVTESLTADDPIHRTTPKQPQNAVERIVLRLRNLGLPSEEEEQQEQQEELPASSTATVTGDERLSELLRREWVRPDVGLVGEDGEDEMMLPWEREEEKVVVVGSGRDEEGLKKRRVTAPSLADLTLEDELLRRLRREGMRVRERVSVPKAGLTQEVMEKIHKRWMKEELVRLKFHEELAKDMRKAHEIVERRTGGLVTWRAGSVMMVYRGIDYQGPDSRKEVNDKKGNDFFVPDVSSGSLLKSEVSNAVSSLEKNDVMEREQEQSKNVTEAEAEYNALLDELGPRFVGWWGTGILPVDADLFPRTVPGYKTPFRLLPTGMRSRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLACAILKLWEKSLVVKIAVKPGIQNTNNELMSEELKMLTGGTLLLRNKYFIVIYRGKDFVPTSVATVLAEREEMTKQVQDVEDKFRCRAVDAIPSGKGEATAQAGTLAEFYVAQARWGREISPEEREKMVEEAAKAKTAKLVRKIEHKLFLAQTKKHRAERILAKIEASMVPAGPDYDQETITDEERVMFRKVGLRMKPYLPLGIRGVFDGVVENMHLHWKHRELVKLMTKQKTLAFVEDTARLLEYESGGILVAIEKVSKEFALIYYRGKNYKRPINLRPRNLLTKGKALKRHVAMQRHEALSQHITELEKTIEQLKKELDKPQDLEDEDGASAEEEDLNQIDNISELTLSENEDSDGFDDEEESDWLDDGEESDWEDDEDPSFPNS 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01477 800 Coils Coil 712 739 - -
Vian8g01477 800 ProSiteProfiles CRM domain profile. 183 279 IPR001890 GO:0003723
Vian8g01477 800 MobiDBLite consensus disorder prediction 766 800 - -
Vian8g01477 800 MobiDBLite consensus disorder prediction 741 755 - -
Vian8g01477 800 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 42 775 IPR045278 GO:0000375|GO:0003729
Vian8g01477 800 Coils Coil 313 340 - -
Vian8g01477 800 ProSiteProfiles CRM domain profile. 592 692 IPR001890 GO:0003723
Vian8g01477 800 SMART CRS1_YhbY_2 185 268 IPR001890 GO:0003723
Vian8g01477 800 SMART CRS1_YhbY_2 383 467 IPR001890 GO:0003723
Vian8g01477 800 SMART CRS1_YhbY_2 594 681 IPR001890 GO:0003723
Vian8g01477 800 SUPERFAMILY YhbY-like 593 691 IPR035920 -
Vian8g01477 800 FunFam CRM-domain containing factor CFM3B, chloroplastic 593 695 - -
Vian8g01477 800 MobiDBLite consensus disorder prediction 97 120 - -
Vian8g01477 800 FunFam CRS2-associated factor 1, chloroplastic 184 279 - -
Vian8g01477 800 SUPERFAMILY YhbY-like 383 474 IPR035920 -
Vian8g01477 800 Coils Coil 231 251 - -
Vian8g01477 800 ProSiteProfiles CRM domain profile. 381 478 IPR001890 GO:0003723
Vian8g01477 800 Gene3D - 382 475 IPR035920 -
Vian8g01477 800 Gene3D - 183 284 IPR035920 -
Vian8g01477 800 MobiDBLite consensus disorder prediction 733 800 - -
Vian8g01477 800 MobiDBLite consensus disorder prediction 46 84 - -
Vian8g01477 800 FunFam CRS2-associated factor 1, chloroplastic 382 478 - -
Vian8g01477 800 Coils Coil 476 496 - -
Vian8g01477 800 Pfam CRS1 / YhbY (CRM) domain 186 268 IPR001890 GO:0003723
Vian8g01477 800 Pfam CRS1 / YhbY (CRM) domain 595 670 IPR001890 GO:0003723
Vian8g01477 800 Pfam CRS1 / YhbY (CRM) domain 383 467 IPR001890 GO:0003723
Vian8g01477 800 Gene3D - 594 699 IPR035920 -
Vian8g01477 800 MobiDBLite consensus disorder prediction 46 81 - -
Vian8g01477 800 SUPERFAMILY YhbY-like 184 274 IPR035920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01477 Vian-Chr8 34235563 34240675 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01477 - - gmx:100788177 1226.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01477 8 34235563 34240675 Vian8g01477 8 34235563 34240675 ECH
Vian1g04087 1 63939045 63943575 Vian8g01477 8 34235563 34240675 PCT