Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04087 ATGCGTTTGAACGTCACAAATGCTTTACTATCATCACTTCCACTCGCTATACCCTCTTCCTACGTTCTCTTCGCCTCTTCCAAATTCAAATTCACATTCCCAGTAGGAATTTGCATTCGCGTTCGTGCTCTCAACACCTTCTCCTCTCTCCCAACTACTTGCCACGATGACAACGATGATTTGTTCGCCCCTATTCCCACTCCCCGCCACGCTGACAAAACCACCAACGCCATCGAGAGAATCGCCCTACGTTTGCGCAACTTAGGGTTAGCCTCCGCCGACCACGCCGACAACGATGACGACGATTTCCTGCGTCGCGAATGGCTTCGTCCCGATGAGGTGCTTTTGCCGTGGGACAAGCGAGAGGGGGAAGAGTGCGAGGAGCACGAGGAACAGCAGAAGGAGAAACTAAAGAAGAAGAGTGTTAGTGCAGTGACGCTGGCGGAGAAAACGGTGGAGGAGGAGGAGCTGCGGCGGTTGCGAACGCTGGGAATGAGTCTTAAGGAGAAGGTCACTATCCCCAAAGCTGGCCTGACGCGAGCCGTGCTCGACAAGATTCACCGGCAGTGGAGCAACTGCGAGTTGGTGAGACTCAAGTTTCACGAGCTTCTTGCTCAGAACATGAAGTTGGCTCATCAAATTGTCGAGTGTAGAACTAGAGGGTTAGTTATATGGAGGTCGGGGAGTTATATGTGGGTGTACCGAGGTAGAAATTACCAAGGGCCGATGCAACCGATTGAAAAGGAAGGAGATGATCGAATTCCTGTGCCAGCAGCCGGGGACGCTGCGCTGATGCTGGCAAAGAGTGAGGCAGTTTTCTGGAAGGAGGAGAACATGACTCCAGAAGAAGTGGAGTTTAACAGGATGCTTGATGGGTTTGGTCATCGTTTTGTTGAATGGTGGGGAACTGGAATACTTCCAATTGATGCTGATTTACTTCCCCCCACAGTTCCTGGTTACAAGACGCCTCTTAGGCTTCTTCCTGCTGGAATGCATCCACGACTGACTAATGATGAACTCACGAATATGCGGAAACTTGCTAAATCTCTTCCTTGTCACTTTGCCTTGGGGAGAAATAGAAATCTTCAAGGTCTGGCATCTGCTATTCTCAGGCTGTGGGAGAAAAGTTTAGTTGCAAAGATTGGAGTCAAGCGTGGTATTGTGAATACAAACAATGAACTGATGGCTCAGGAGCTGAAGAAATTAACAGGAGGTACTTTACTCCTGCGGAACAAATATTACATTGTAATATATCGTGGGAAGGACTTTGTTCCAACCAGTGTGGCTGCTGTTATTGCTGAAAGACAGGAAATGACAAAACATGTGCAGGATGTTGAGGAGAAGGTGCGGTGCAAAGTTCATGACATAGCTCCTTCAAGGGAAGATGAATCAAAATCCCAAGCAGGATCATTGGCTGAGTTCTATGAGGCTCAGGCATGCTGGGGAAGGGATATATCTACTGAAGAACGTGAGAGGATGAGGCAAGAGGTTGCCAAAGCCAAGAATGCTAAGCTTGCCAAAAAAATTGAATGTAAACTAGCTGTTGCCCAAGCCAAAAGGCTTAGAGCAGAAAAGCTATTAGCGAAAATAGAAGTATCTTTGGTTCCAGTTGGTCCTGATTATGACAAGGAAACAATCACAGATGAAGAACGTGTTATGTTCCGTTCAGTTGGTTTAAGAATGAAGGCATACTTGCCTCTTGGTATACGTGGTGTTTTCGATGGTGTCATTGAGAACATGCATCTGCACTGGAGGCATCGAGAACTTGTTAAATTAATAACAAAACAAAAGACCCTTGCTTTTGTTGAAGACACAGCTAGGTTACTGGAATATGAGAGTGGTGGAATACTAGTAGCAATAGATGAAATTCCTAAAGGATTTTCTCTTATTTACTATCGTGGAAAGAATTATAGGCGACCTATGACTCTAAGGCCTAGAAACCTTCTAACAAAGGCAAAGGCATTGCAGCGGTCAATAGCCATGCAACGGCACGAGGCTCTGAGTCAACATGTAACTGAATTGGGGAAAAAAATAGAAAAAATGAAAAAAGAACTTAGTGAGGATGGATTCTCTGACGGAGATGACAATTATGGTGATTTCAATGGCGAGGAATACAGTGATTACAATGATAAGAATTCTGAATTTTAG 2148 0.4581 MRLNVTNALLSSLPLAIPSSYVLFASSKFKFTFPVGICIRVRALNTFSSLPTTCHDDNDDLFAPIPTPRHADKTTNAIERIALRLRNLGLASADHADNDDDDFLRREWLRPDEVLLPWDKREGEECEEHEEQQKEKLKKKSVSAVTLAEKTVEEEELRRLRTLGMSLKEKVTIPKAGLTRAVLDKIHRQWSNCELVRLKFHELLAQNMKLAHQIVECRTRGLVIWRSGSYMWVYRGRNYQGPMQPIEKEGDDRIPVPAAGDAALMLAKSEAVFWKEENMTPEEVEFNRMLDGFGHRFVEWWGTGILPIDADLLPPTVPGYKTPLRLLPAGMHPRLTNDELTNMRKLAKSLPCHFALGRNRNLQGLASAILRLWEKSLVAKIGVKRGIVNTNNELMAQELKKLTGGTLLLRNKYYIVIYRGKDFVPTSVAAVIAERQEMTKHVQDVEEKVRCKVHDIAPSREDESKSQAGSLAEFYEAQACWGRDISTEERERMRQEVAKAKNAKLAKKIECKLAVAQAKRLRAEKLLAKIEVSLVPVGPDYDKETITDEERVMFRSVGLRMKAYLPLGIRGVFDGVIENMHLHWRHRELVKLITKQKTLAFVEDTARLLEYESGGILVAIDEIPKGFSLIYYRGKNYRRPMTLRPRNLLTKAKALQRSIAMQRHEALSQHVTELGKKIEKMKKELSEDGFSDGDDNYGDFNGEEYSDYNDKNSEF 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04087 715 Pfam CRS1 / YhbY (CRM) domain 153 235 IPR001890 GO:0003723
Vian1g04087 715 Pfam CRS1 / YhbY (CRM) domain 547 633 IPR001890 GO:0003723
Vian1g04087 715 Pfam CRS1 / YhbY (CRM) domain 335 419 IPR001890 GO:0003723
Vian1g04087 715 Coils Coil 664 684 - -
Vian1g04087 715 FunFam CRS2-associated factor 1, chloroplastic 151 245 - -
Vian1g04087 715 ProSiteProfiles CRM domain profile. 544 644 IPR001890 GO:0003723
Vian1g04087 715 ProSiteProfiles CRM domain profile. 150 246 IPR001890 GO:0003723
Vian1g04087 715 SUPERFAMILY YhbY-like 152 244 IPR035920 -
Vian1g04087 715 Gene3D - 151 250 IPR035920 -
Vian1g04087 715 Gene3D - 545 645 IPR035920 -
Vian1g04087 715 Gene3D - 334 429 IPR035920 -
Vian1g04087 715 ProSiteProfiles CRM domain profile. 333 430 IPR001890 GO:0003723
Vian1g04087 715 SMART CRS1_YhbY_2 546 633 IPR001890 GO:0003723
Vian1g04087 715 SMART CRS1_YhbY_2 152 235 IPR001890 GO:0003723
Vian1g04087 715 SMART CRS1_YhbY_2 335 419 IPR001890 GO:0003723
Vian1g04087 715 MobiDBLite consensus disorder prediction 685 715 - -
Vian1g04087 715 FunFam CRS2-associated factor 1, chloroplastic 334 430 - -
Vian1g04087 715 FunFam CRM-domain containing factor CFM3B, chloroplastic 545 647 - -
Vian1g04087 715 SUPERFAMILY YhbY-like 545 643 IPR035920 -
Vian1g04087 715 SUPERFAMILY YhbY-like 335 426 IPR035920 -
Vian1g04087 715 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 72 695 IPR045278 GO:0000375|GO:0003729
Vian1g04087 715 Coils Coil 483 510 - -
Vian1g04087 715 Coils Coil 428 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04087 Vian-Chr1 63939045 63943575 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04087 - - vra:106765477 1230.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04087 1 63939045 63943575 Vian1g04087 1 63939045 63943575 ECH
Vian1g04087 1 63939045 63943575 Vian8g01477 8 34235563 34240675 PCT