Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01203 ATGTCGCGACTCTTTGGTAGATGGAAGAAGGCGAAGGAAATGGCGTCGCTTTCGGGGTTTCTGCCACGTGGGCACCAGCGAATCGGGTTAAATTTTTGCCCAATTTCGACCCAGCTGAATATGATATCCGGCCACCGGCGGTGGGAGGCTCAGGTGGGGGTTCAGGAGCGGTATAAGTGGGACCGTGGCGGGTCGGACGACAACCCGACCCGGAAGATCCGGGCTGAGGCTAATTGTCCACGTTGTACTAAGGACATGAACCTTGTTTTCTCTAATCGCCATTTTCCCACCCCACAAAGTGAGTCTAATTCTGAATTGGATGGCGAGGGAGAGAGAGAAAAGGGTTACCAAGCGGTTAACCTTTGTCCGAGTTGCAAAACTGCTTATTATTTTCGCCCTTATGACACTACACCTTTGCAAGGTACTTTCGTGGAGATTGGTAGGGTCAGTAGCACTAACAATAATGGTCTTAATAATGTAAGTGGTAAGGGACATTCAACTAGGAGGATCACACATGGGAAAGGTGGTGGCAAAGAAGGTAGTAGTAGTACTAGTAGGGGTATTCATGGAGGAGAGGAATCTGGCCCTAAGAGTAATAATAGTGCAAGTAAATGGCTTGAAGTGTCATTGTGGGAGACTTTGATGTCATACAATGGTGGTGGTGGTGGTAATGGTAGTAATGGGGAGCCACCTGAGTCGTGGCCTGGTGTTAATGGGAATGAGAATGGGTTGGCTGTGCATACTCCTCCAGGGCCACCTTTTGCACCTGGGATTAATGTTATCCGGGCTACGGGGCCGCGGAATGGTGGTTCAGATGGTGGTGGAGGCAATGGTGAGAAGACTGCCTGGGGAGGGTCTAATTTGGGGAAGGATTTGCCCTCACCGAAGGAGATATGTAAGGGTCTTGACAAGTTTGTTATTGGCCAAGAGAGAGCCAAGAAGGTGCTTTCTGTAGCTGTTTATAACCACTATAAAAGAATATACCATGCCACTTTACAGAAAGGGTTAGTTCTTTTACTACCCCTTGGTGGAACTGCAGCCGTGGAGTTGGATACTAGGTCAACTGTAGATTCAGAAGTATTAGATGATGACGATAATGTGGATCTAGAAAAGAGTAATGTTCTCTTGATGGGTCCAACAGGTTCAGGGAAGACATTACTTGCCAAAACACTGGCTCGATTTGTGAATGTGCCTTTTGTCATTGCTGATGCAACAACCTTAACACAGGCAAAGATAAGAATGTATTTGGCTGGTTATGTTGGAGAAGATGTTGAATCAATATTGTACAAACTACTAGCGGCAGCAGATTTCAATGTTGCAGCAGCTCAACAAGGAATAATTTACATTGATGAAGTTGACAAAATAACTAAGAAGGCTGAGAGCTTAAATATCAGCAGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACTATAGTAAATGTTCCTGAGAAAGGAGCCAGGAAGCATCCAAGGGGGGATAACATTCAGATGGACACAAAAAATATTCTTTTTATATGTGGTGGAGCATTTATCGATCTTGAAAAAACCATTTCAGAAAGACGACAAGATTCTTCAATTGGTTTTGGAGCACCAGTTCGTGCCAATATGAGAACTGGTGGAATAACAGATTCTGTAGTAACATCATCTTTACTTGAGTCCGTGGAAAGTGCTGATCTTATTGCGTTTGGCCTCATACCAGAGTTTATTGGACGATTCCCCATCTTAGTCAGCTTGTCAGCTTTAACTGAAGACCAACTTATGATGGTCAAGTTACACTTTACAGAGAAAGCTCTAAGGCTGATAGCAAAGAAAGCAATGTCCAAAAATACTGGTGCTAGAGGTTTAAGATCCCTACTGGAAAGCATTTTAACTGAGGCGATGTTTGAGATTCCTGATATTAAGACAGGAAGTGATCGAATTGATGCAGTTGTTGTTGATGAAGAGTCAGTAGGATCACTAACTTCCCTCGGATGTGGGGGGAAAATTCTTCGGGGAGATGGTGCTTTGGAGCAGTACCTAGCTAAGATGAAAGATTCAGCGGTTAATGTTGATGTGGGCGAATCAGACCTAAATGAGGGGGATTTGGAGCTTTCATCAAGAGCCATGAGCTTGTAA 2136 0.4457 MSRLFGRWKKAKEMASLSGFLPRGHQRIGLNFCPISTQLNMISGHRRWEAQVGVQERYKWDRGGSDDNPTRKIRAEANCPRCTKDMNLVFSNRHFPTPQSESNSELDGEGEREKGYQAVNLCPSCKTAYYFRPYDTTPLQGTFVEIGRVSSTNNNGLNNVSGKGHSTRRITHGKGGGKEGSSSTSRGIHGGEESGPKSNNSASKWLEVSLWETLMSYNGGGGGNGSNGEPPESWPGVNGNENGLAVHTPPGPPFAPGINVIRATGPRNGGSDGGGGNGEKTAWGGSNLGKDLPSPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIYHATLQKGLVLLLPLGGTAAVELDTRSTVDSEVLDDDDNVDLEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAKIRMYLAGYVGEDVESILYKLLAAADFNVAAAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQMDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGITDSVVTSSLLESVESADLIAFGLIPEFIGRFPILVSLSALTEDQLMMVKLHFTEKALRLIAKKAMSKNTGARGLRSLLESILTEAMFEIPDIKTGSDRIDAVVVDEESVGSLTSLGCGGKILRGDGALEQYLAKMKDSAVNVDVGESDLNEGDLELSSRAMSL 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01203 711 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 74 684 - -
Vian8g01203 711 MobiDBLite consensus disorder prediction 150 166 - -
Vian8g01203 711 MobiDBLite consensus disorder prediction 217 250 - -
Vian8g01203 711 Gene3D - 587 664 - -
Vian8g01203 711 Pfam C-terminal, D2-small domain, of ClpB protein 595 636 IPR019489 -
Vian8g01203 711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 652 IPR027417 -
Vian8g01203 711 CDD RecA-like_ClpX 293 585 - -
Vian8g01203 711 MobiDBLite consensus disorder prediction 92 112 - -
Vian8g01203 711 MobiDBLite consensus disorder prediction 265 289 - -
Vian8g01203 711 MobiDBLite consensus disorder prediction 150 202 - -
Vian8g01203 711 Gene3D - 286 586 IPR027417 -
Vian8g01203 711 SMART AAA_5 370 585 IPR003593 GO:0016887
Vian8g01203 711 Pfam AAA domain (Cdc48 subfamily) 370 581 IPR003959 GO:0005524|GO:0016887
Vian8g01203 711 MobiDBLite consensus disorder prediction 177 202 - -
Vian8g01203 711 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 286 586 - -
Vian8g01203 711 SMART ClpB_D2_small_2 588 660 IPR019489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01203 Vian-Chr8 30708142 30716641 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01203 K03544 - gmx:100805340 1132.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01203 8 30708142 30716641 Vian8g01203 8 30708142 30716641 ECH
Vian8g01203 8 30708142 30716641 Vian3g01182 3 13097835 13103746 PCT