Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01182 ATGTCTCGAATATTCTCTGCATGGAACAAGAAGAAGCTGCATCTCAGTTTCTTGCCCAGTTTTTTCTCTTCTAGGCACAGCACCAGTACTCGGCCTTTACGGCCGAGGATTCTCAGATTGTACAGTAGCAGCAATGGGGAGCCACCGCAGGATTGGCATCACGACGCTGCCGTGCCTTCGCAAACTCCTTTCAGTGTTAATTTTGTTCGGGCCGCCGCTGGGCCCCGCCAAGAGAACACTGGGTGGGTCGGAGGCTCCAATTTGGGTAGGGATTTTCCGACTCCCAAGGAAATCTGCAAGGGTCTCGATAAATTTGTTATTGGGCAACACAGGGCCAAGAAGGTGCTCTCTGTAGCGGTTTATAATCACTACAAGAGAATATTTAACGGGTCAGGGGAAGATGCGGGAATCTCCGAAGGATTGGATGATGACGATAATGTGGAGCTGGAAAAGAGTAATGTTCTCTTGATGGGTCCAACTGGTTCAGGGAAGACATTACTTGCGAAAACACTGGCTCGTTTTGTGAATGTTCCCTTTGTCATTGCTGATGCAACTACACTAACGCAGGCAAGTAGTGAGGCTGGTTATGTTGGAGAAGACGTTGAGTCAATATTGTATAAACTACTTGCGGTAGCATTTACAAGCATAAATCACACTCTTTCCGCGTTTGTTGAAAAGCTTTACCTTGCTTCCCATATTTTTTTCTGGGCTGGTTTGTGTGCCAATGTTCCCAAGGCAGCAGAGTTCAATGTTCAAGCAGCTCAACAAGGGATTGTTTACATTGATGAAGTGGACAAGATAACTAAGAAGGCTGAAAGCTTGAATATTAGCCGAGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACTATAGTAAACGTCCCTGAGAAAGGAGCAAGGAAGCATCCACGGGGTGATAACATACAGATTGACACAAAGAACATTCTCTTCATATGTGGTGGAGCATTTATTGATCTTGAAAAAACCATTTCAGAGAGACGGCAAGATTCTTCAATTGGTTTTGGGGCACCAATCCGTGCCAATATGAGAGCTAGTGGGGTTACACATGCTGCAGTAACATCATCTTTACTTGAGTCGGTGGAAAGTTCTGATCTTATTGCATATGGTCTCATCCCAGAGTTTATAGGACGGTTTCCAATCTTAGTTAGCTTATCAGCTCTAACTGAAGACCAACTCATGCAGGTCCTCACAGAACCAAAAAATGCTCTTGCTAAGCAGTACAAGAAATTATTTGACATGAATGACGTAAAGCTACACTTCACAGAGAAAGCTCTTAGATTGATTTCAAAGAAAGCAATGGCCAAAAATACTGGTGCCAGGGGTTTAAGAGCTCTACTGGAAATCATTTTAACGGAAGCTATGTTTGAGATTCCAGATGTTAAAGCAGGAAATGAAATGATTGATGCGGTTGTTGTTGATGAGGAGTCGGTAGGATCGGTAAATTTCCTTGGCTGTGGAGGAAAAATTCTTTGTGGAGAGGGTGCTTTAGATCGGTACCTAGCTAAGATGGAGAGTTCAGTGGTTAATCATGACGTAGCGGAACCAGACTTACAAGAGGGGGAATCAGAGATTTCATCAAGAGCTATGGGCATGTAA 1635 0.4404 MSRIFSAWNKKKLHLSFLPSFFSSRHSTSTRPLRPRILRLYSSSNGEPPQDWHHDAAVPSQTPFSVNFVRAAAGPRQENTGWVGGSNLGRDFPTPKEICKGLDKFVIGQHRAKKVLSVAVYNHYKRIFNGSGEDAGISEGLDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQASSEAGYVGEDVESILYKLLAVAFTSINHTLSAFVEKLYLASHIFFWAGLCANVPKAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPIRANMRASGVTHAAVTSSLLESVESSDLIAYGLIPEFIGRFPILVSLSALTEDQLMQVLTEPKNALAKQYKKLFDMNDVKLHFTEKALRLISKKAMAKNTGARGLRALLEIILTEAMFEIPDVKAGNEMIDAVVVDEESVGSVNFLGCGGKILCGEGALDRYLAKMESSVVNHDVAEPDLQEGESEISSRAMGM 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01182 544 CDD RecA-like_ClpX 93 397 - -
Vian3g01182 544 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 57 517 - -
Vian3g01182 544 SMART AAA_5 150 385 IPR003593 GO:0016887
Vian3g01182 544 Pfam AAA domain (Cdc48 subfamily) 150 209 IPR003959 GO:0005524|GO:0016887
Vian3g01182 544 Pfam AAA domain (Cdc48 subfamily) 245 393 IPR003959 GO:0005524|GO:0016887
Vian3g01182 544 Gene3D - 399 496 - -
Vian3g01182 544 Gene3D - 87 398 IPR027417 -
Vian3g01182 544 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 399 498 - -
Vian3g01182 544 SMART ClpB_D2_small_2 400 493 IPR019489 -
Vian3g01182 544 Pfam C-terminal, D2-small domain, of ClpB protein 400 469 IPR019489 -
Vian3g01182 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 486 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01182 Vian-Chr3 13097835 13103746 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01182 K03544 - gmx:100818418 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01203 8 30708142 30716641 Vian3g01182 3 13097835 13103746 PCT