Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01128 ATGGGGGCTGGTGTTTCCACAAGTGCCACAGAAAATGATGAAGTTGGCACCTTTTCTTTGTCCTCCCCACAGACGACAACCCTTGATGATGTTCCTGAGAATTGCATCTCTTCTCTCATGATGAGTTTTGATCCACAAGAGATTTGCACATTGGCCAGAGTGAACAAGACCTTCCACAGAGCTTCTTCTGCTGACTTTGTCTGGGAATCTAAGTTGCCCTCAAACTATAAATTCCTTCTCAACAAAGTACTTGATCAACACACCAATCTTTCTTCCATCACCAAGAAAGAGATCTATGCCAAACTATGCACACCCAATTTCTTCGATCATGGCACCAAGGAGATTTGGCTTGACAGATGCAGTGCACAAGTTTGTTTGTTCATTTCTTCAAAAGCCTTCAAGATTACAGGAATAGATGATAGAAGATATTGGAATTATGTTCCGACTGAGGAATCCAGGTTTAAGAGTGTTGCATATCTTCAACAAATGTGGTGGGTTGAAGTAATAGGAGAGCTAGAGTTTGAGTTTCCAAAGGGAAACTATAGTGTATTTTTCAAGCTTCAATTGGGGAAGCCCACAAAGAGATTGGGCCGGAGAGTGTGCAACCTTGACCAAGTTCATGGATGGGACATCAAGCCCGTCAGATTTCAGCTATCTACATCTGACGGCCAGAGTTCACTCTCACAGTCCTATCTGCGTGGGCCTGGAGAATGGGCCCACTATCATGTTGGGGACTTTGCAGTTGAGAAGCCCAATGGGCCAACAAATATCAAGTTTTCTTTGGCCCAAATTGATTGCACGCACACCAAAGGTGGGCTTTGCATAGATGGGGTAGTGATTTGCCCAAAGGAGTTTTCAGAAAGGCTGAAACAGTTTAAGGGGGAGAAATCTGTTCTGTCTGCTTTAAGGCTTTGGTTTTTGGAAATGACTGAAGAGAAAAACAAAATGGATTTCATTCAATTGCTTGGACCTGACATGTCAGTCAAGATTCTGACCCATTTGGACGCCCCTTGTGATCTTATTAGGGTTTCTGCTGTTTCTAGTTCTTGGCACCGATTTGTTCTTGAACATGGCCTTTGCAAGCAACTTTGCTTGGCAATGTTTCCTGAAATATCTGGTGTTACTCATATGATTGAGCTTGACAACATTATTGAACCACTGGGAAACACTCCTGGCAGTTGTGTAAATTGGGAGTATCTAAAGAGAAATCATAAAGTCTATGCATTCTTGTCCTCTGGTCTTCATCCTGTGAGAAAAAGTTGTATCTCTAAAGCTATTAGTGCATCTAGCACTGATAACTATCCTGAAGAAAGCATTCTACACACATTGGAGCCTGGTGATAGAACTGAATATACAGCATCATACTGGTCAAGCAAAGGGGAAAACGATCCTTCTGTTCCTGAGACTTTAGTTTACAAGCTTGTTTCAGAAATGTGTCTTGTTACAGAGATTCATGTCCAACCGTTCCAAGCATTTTTTCAGCATGGCTTGCCTATATATTCTGCTAAGGCTGTCCGATTCAGAATGGGACATCCAAGATACCCAATTGAATCGGAGAGTGCTGTAGATAATATAACTGCTAATGAAGTCTTGGGCGATAATCAATTCATATGGACGTATACTTCACCTGAATTTCCAATGTGCCAAGAAAACAGCTTGCAAAAATTCAACCTCCCTAAACCTTTTCTGTGCATTGGAGGCATTCTGCTAGTTGAGCTATTGGGTAGAGTTCAAAAACAAGAGATGGATGAATTATTCTACATATGCATCTCCCATGTTCAAGTCATGGGACGGCCACTTTCACCAGCATTTGATGTTAAAGTTCATCATCCATCAGGGAAGTGTACCTTGAAATACCATCCTCCTCCGACAGATCCTCACATGTCTTCAACATCTTCGCCGGACTCGAGCAGTTCGTCGCGCCTGCGCATAATAACCTCGAGCCTAGTGCAGAGGGGTGTGAGACGTTGGGAGCAAATTCTCTTGGGTGCACTGCTTGGTTCTGGCCCTGTTGTAGTTGATGATTAA 2028 0.4285 MGAGVSTSATENDEVGTFSLSSPQTTTLDDVPENCISSLMMSFDPQEICTLARVNKTFHRASSADFVWESKLPSNYKFLLNKVLDQHTNLSSITKKEIYAKLCTPNFFDHGTKEIWLDRCSAQVCLFISSKAFKITGIDDRRYWNYVPTEESRFKSVAYLQQMWWVEVIGELEFEFPKGNYSVFFKLQLGKPTKRLGRRVCNLDQVHGWDIKPVRFQLSTSDGQSSLSQSYLRGPGEWAHYHVGDFAVEKPNGPTNIKFSLAQIDCTHTKGGLCIDGVVICPKEFSERLKQFKGEKSVLSALRLWFLEMTEEKNKMDFIQLLGPDMSVKILTHLDAPCDLIRVSAVSSSWHRFVLEHGLCKQLCLAMFPEISGVTHMIELDNIIEPLGNTPGSCVNWEYLKRNHKVYAFLSSGLHPVRKSCISKAISASSTDNYPEESILHTLEPGDRTEYTASYWSSKGENDPSVPETLVYKLVSEMCLVTEIHVQPFQAFFQHGLPIYSAKAVRFRMGHPRYPIESESAVDNITANEVLGDNQFIWTYTSPEFPMCQENSLQKFNLPKPFLCIGGILLVELLGRVQKQEMDELFYICISHVQVMGRPLSPAFDVKVHHPSGKCTLKYHPPPTDPHMSSTSSPDSSSSSRLRIITSSLVQRGVRRWEQILLGALLGSGPVVVDD 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01128 675 PANTHER F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED 310 662 - -
Vian8g01128 675 ProSiteProfiles F-box domain profile. 25 71 IPR001810 GO:0005515
Vian8g01128 675 SMART fbox_2 322 363 IPR001810 GO:0005515
Vian8g01128 675 SMART fbox_2 31 70 IPR001810 GO:0005515
Vian8g01128 675 MobiDBLite consensus disorder prediction 1 23 - -
Vian8g01128 675 SUPERFAMILY F-box domain 19 102 IPR036047 GO:0005515
Vian8g01128 675 Gene3D - 306 409 - -
Vian8g01128 675 MobiDBLite consensus disorder prediction 619 639 - -
Vian8g01128 675 SUPERFAMILY F-box domain 310 380 IPR036047 GO:0005515
Vian8g01128 675 CDD F-box_AtSKIP3-like 28 73 - -
Vian8g01128 675 MobiDBLite consensus disorder prediction 625 639 - -
Vian8g01128 675 Pfam Phloem protein 2 124 282 IPR025886 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01128 Vian-Chr8 29516278 29525386 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01128 - - gmx:100786763 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01128 8 29516278 29525386 Vian3g00602 3 6071966 6074544 ECH
Vian8g01128 8 29516278 29525386 Vian8g01128 8 29516278 29525386 ECH
Vian8g01128 8 29516278 29525386 Vian3g00602 3 6071966 6074544 PCT