Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00602 ATGGGGGCTGCTGTTTCTTCACCCGATAGAGCTGTAGACGAAGAAGGGTCTGATTCTCATCCATCAAGACCGGGTCTTGCTGATATCCCAGAGAGTTGCATCTCCTCCTTGCTCATGAATCTTGATCCACCAGATATATGCAAATTGGCAAGGGTGAATAGGGCCTTTCACCGAGCTTCCTCGGCTGATTTTGTGTGGGAATCAAAGCTGCCACCAAGTTACAAGTTTCTTGCTAATAAAGTTCTTGGCGAACAAAATATTGCTACTATGACAAAGAAAGAGATTTATGCAAAACTTAGCCTACCCAATCGTTTTGATGGCGGCGCCAAAGAAGTTTGGTTGGACAAATGTAGTGGACTGGTTTGTTTGTTCATGTCATCCAAGTCCTTGAAGATTACAGGAATAGATGACAGAAGATACTGGAATTATATTCCGACCGAAGAATCCAGTACGTGCAGGTTCAAGAGTGTCGCATATCTACAACAAATGTGGTGGGTTGAAGTGGTGGGGGAGCTAGAGTTTGAATTCCCTGTGGGGAGTTACAGCTTAGTTTTCAGACTCCAATTGGGCAAGGCCTCAAAGAGATTGGGCCGGCGAGTCTGCAACGTTGATCAAGTTCATGGTTGGGACATCAAGCCCGTCCGATTCCAACTGTCCACATCGGACGGCCAGCACTCACTCTCAGAGTGTTACTTGCAAGGACCTGGGGAATGGGTCTACTATCATGTTGGAGATTTCGTGGTCGAAAAGCCCAATGAGCCAACAATTATGAAGTTCTCATTGGCCCAAATTGATTGTACTCACACCAAAGGTGGGCTCTGCGTGGATAGTGCCATCATCTGCCCGACGATGTTGAGAGAAAGACTAGGAAAAAGTTAA 879 0.4619 MGAAVSSPDRAVDEEGSDSHPSRPGLADIPESCISSLLMNLDPPDICKLARVNRAFHRASSADFVWESKLPPSYKFLANKVLGEQNIATMTKKEIYAKLSLPNRFDGGAKEVWLDKCSGLVCLFMSSKSLKITGIDDRRYWNYIPTEESSTCRFKSVAYLQQMWWVEVVGELEFEFPVGSYSLVFRLQLGKASKRLGRRVCNVDQVHGWDIKPVRFQLSTSDGQHSLSECYLQGPGEWVYYHVGDFVVEKPNEPTIMKFSLAQIDCTHTKGGLCVDSAIICPTMLRERLGKS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00602 292 MobiDBLite consensus disorder prediction 1 26 - -
Vian3g00602 292 Pfam Phloem protein 2 121 282 IPR025886 -
Vian3g00602 292 PANTHER F-BOX PROTEIN PP2-A15 17 287 - -
Vian3g00602 292 ProSiteProfiles F-box domain profile. 23 69 IPR001810 GO:0005515
Vian3g00602 292 SUPERFAMILY F-box domain 16 80 IPR036047 GO:0005515
Vian3g00602 292 CDD F-box_AtSKIP3-like 26 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00602 Vian-Chr3 6071966 6074544 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00602 - - gmx:100795463 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01128 8 29516278 29525386 Vian3g00602 3 6071966 6074544 ECH
Vian3g00602 3 6071966 6074544 Vian3g00602 3 6071966 6074544 ECH
Vian8g01128 8 29516278 29525386 Vian3g00602 3 6071966 6074544 PCT