Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01055 ATGTGTCCTTCTGGGTTTTCATCATCTTCCACTGCAGAAGAAGTTACTCTTGGAATCCATGGTGATGGTCTCACTGCAATTGTCACAGGAACAACACATGGTATTGGCATTGAGACAGCAAGAGTTCTAGCTTTGCGTGGTGTCCATGTGATTATGGCAGTGAGAAATGTGGTTGCTGCAGAAGCTGTCAAAGAAGCAATCCTCAAAGAGATTCAAACAGCCAAAGTTGATGTCATGGAGTTAGATCTCAGTTCAATGGCATCTGTTAGAAAATTTGCATCAGAGTTCACTTCATCTGGTTTACCATTGAACATCTTGATGACTACAGTAGCAGTAATGTTCTTAGGGTTTGTTTGTTGTAATGCTAGAAACAATGCAGGGATAACTGCAACCCCTTTCTCACTGTCTAAAGACAACATCGAACTACAATTTGCCACAAATCACTTGGGCCATTTTCTTTTAACACATCTTTTATTGGATACTATGAAGAAAACTGCAAGTGTAAGCAAGAGAGAAGGAAGAATTGTGAATGTCTCCTCTGATGGTCACCAATATACATACCCTGAAGGAATTCGTTTTGATAAAATTAATGATGAATCAAGTTTCCAGCTGTGGCATGCATATGGGCAATCAAAGCTTGCTAACATCTTACATGCAAACGAACTTGCAAGACGTCTTAAAGAAAATAGGGTAGATATTACAGCAAATTCTCTTCATCCAGGAGCAATTATAACCAATATTTATAAGCCAGAGATTAGTGGCGCTGTGCCAACAGATTTAATTAATATGCTTGGCAATTACGCGATGAAAAGTATTCAGCAGGGAGCAGCAACGACATGCTATGTAGCTTTGCATCCACAGGTGAAGGGAATCAGTGGCGAGTACTTTTCAGACAATAATGTGGCTAAAGCAAGCTCACTGGCAAAGGACACTGATTTGGCTAAAAAACTTTGGGATTTCAGCAAGGAAATAATTGATTAG 981 0.3965 MCPSGFSSSSTAEEVTLGIHGDGLTAIVTGTTHGIGIETARVLALRGVHVIMAVRNVVAAEAVKEAILKEIQTAKVDVMELDLSSMASVRKFASEFTSSGLPLNILMTTVAVMFLGFVCCNARNNAGITATPFSLSKDNIELQFATNHLGHFLLTHLLLDTMKKTASVSKREGRIVNVSSDGHQYTYPEGIRFDKINDESSFQLWHAYGQSKLANILHANELARRLKENRVDITANSLHPGAIITNIYKPEISGAVPTDLINMLGNYAMKSIQQGAATTCYVALHPQVKGISGEYFSDNNVAKASSLAKDTDLAKKLWDFSKEIID 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01055 326 CDD retinol-DH_like_SDR_c_like 23 318 - -
Vian8g01055 326 Pfam short chain dehydrogenase 25 189 IPR002347 -
Vian8g01055 326 Gene3D - 21 326 - -
Vian8g01055 326 PRINTS Glucose/ribitol dehydrogenase family signature 231 248 IPR002347 -
Vian8g01055 326 PRINTS Glucose/ribitol dehydrogenase family signature 25 42 IPR002347 -
Vian8g01055 326 PRINTS Glucose/ribitol dehydrogenase family signature 167 183 IPR002347 -
Vian8g01055 326 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Vian8g01055 326 PANTHER RETINOL DEHYDROGENASE 3 325 - -
Vian8g01055 326 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 302 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01055 Vian-Chr8 27883412 27887669 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01055 - - mtr:25496527 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01055 8 27883412 27887669 Vian3g00650 3 6606217 6609496 PCT