Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00650 ATGTGGCCATTCAGCAAGAAAGGGGCTTCTGGGTTTTCATCATCATCCACTGCTGAGCAAGTCACTGAAGGTCTTGATGGAACTGGTCTCACTGCCATTGTTACAGGAGCATCCAGTGGTATTGGCACTGAGACTACACGTGTACTTGCTTTGCGAGGTGTCCATGTGATCATGGGTGCGAGAAATATGGTTGCTGCTAAAGATGTCAAAGAAACAATACTTAAGGAGATTCCCTCTGCAAAAGTTGATGCCTTGGAATTAGATCTCAGTTCAATGGATTCTGTCAAAAAATTTGCATCTGATTTTAAGTCTTCTGGTCTTCCGTTGAACATCTTGATAAACAACGCAGGAATTATGGCATGCCCTTTCAAGCTCTCTGCAGACAAAATTGAACTACAGTTTGCCACAAATCACATTGGTCACTTTTTATTGACAAATCTTTTGTTGGACACTATGAAGAAAACTTCACGTGAAACTAAGAAAGAAGGAAGAATTGTTAATGTCTCTTCTGAGGCTCACCGGTTTGCATATTCTGAAGGAATCCGTTTTGACAAAATTAATGATAAGTCAAGTTACAGAGCCTGGGGTGCATATGGGCAGTCAAAGCTTGCCAACCTTTTACATGCGAATGAACTTTCAAGGCGTCTCAGGGAAGATGGGGTGGAGATTTCTGCAAATTCTCTTCATCCTGGAGCAATTACCACCAATCTTTTCCGTCATACTCCAATAAACGAATCAGCTCCTCAGCAAACTGACTTGGGGTTTATAAGGCCTTGA 777 0.4196 MWPFSKKGASGFSSSSTAEQVTEGLDGTGLTAIVTGASSGIGTETTRVLALRGVHVIMGARNMVAAKDVKETILKEIPSAKVDALELDLSSMDSVKKFASDFKSSGLPLNILINNAGIMACPFKLSADKIELQFATNHIGHFLLTNLLLDTMKKTSRETKKEGRIVNVSSEAHRFAYSEGIRFDKINDKSSYRAWGAYGQSKLANLLHANELSRRLREDGVEISANSLHPGAITTNLFRHTPINESAPQQTDLGFIRP 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00650 258 Pfam short chain dehydrogenase 31 177 IPR002347 -
Vian3g00650 258 CDD retinol-DH_like_SDR_c_like 29 244 - -
Vian3g00650 258 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 27 244 IPR036291 -
Vian3g00650 258 PANTHER RETINOL DEHYDROGENASE 10 241 - -
Vian3g00650 258 Gene3D - 21 254 - -
Vian3g00650 258 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Vian3g00650 258 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Vian3g00650 258 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Vian3g00650 258 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Vian3g00650 258 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Vian3g00650 258 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Vian3g00650 258 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00650 Vian-Chr3 6606217 6609496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00650 31 183 Acyl Lipid Metabolism Gene Families AT1G62610 31.707 3.17e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00650 - - gmx:100783465 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00650 3 6606217 6609496 Vian3g00650 3 6606217 6609496 ECH
Vian8g01055 8 27883412 27887669 Vian3g00650 3 6606217 6609496 PCT