Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01035 ATGGAGACACCATTAGTGAGCCAGAAGTTTACTTCAGAATCTGACTATTCTGCAGTGAAAAGGTTGAAGGATGTTAAATTTGTATTGTGGACAGAGACAGTGAAGATATGGAAGATAGCTTTGCCAGTGGCATTGACCCATCTCTTTCAGTTCCTCACAAACTCCTCAACTTCCATCTATGCTGGTCATCTAGGTGACATTCAACTCTCTTCAATCTCTGTTAGCCAAGGTGTTCTCAGTTCCATCTATTTTTACTTGCTGTTTGGTATGTCATCTGCACTGGCAACACTTTGTGGCCAAGCTTTTGGAGCAGGGCAGATTGTTTCTACTTGCATTTATGTTCAAAGGTCATGGATTATACTCACCATCACTTGCACAATTCTCTTGCCTGTTTATGTATATGCCACACCAGTGTTGAAGTTGCTAGGCCAAGATGAAGAAATAGCTGATCTTGCTGGCACATATTCTATACAATTGATTCCCCACATGTTTTCCTTTGCTATAGTTTTTCCCACCCTAAGATTTCTTCAGGCCCAGAGCAAGGTTAAAGTGATCATGTGCATAGCATTTGTGGTTCTGCTCATTCAAAATGGCTTGCTTTACATGTTCATACATGTGTTTGGTTGGGGTGTAACTGGTTTAGCCATGGTGAGTGACATCATAGGGTGGCTCTATGCTTTGGCTTTGGTTGTGTATACCATTGGATGGAACAAGGAAGAATGGAGTGGATTTTCTTGGATGGCATTCAGGGATTTATGGGCATTTTCTAAGTTATGCCTTGCTTCATCTGTCATGATTTGCTTAGAGCAATGGTATCTTACATGCATTATGCTCCTTGTTGGTCTTCTACAGAATCCTGTCATTTCTGTTGCTTCCTATTCTATTTGCTTCAATGTTCAGGGTTGGCACTTCACACTGCTCCTAGGAATAAACACAGCCATAAGTGTTCGTGTATCCAACACGCTTGGCATGTCACATCCAAGAGCAGCGAAATACTCTTTCTATGTGGCAATGTTCCAGTCTCTCCTCCTTGGTATTCTTTTCATGACACTTATTTTCCTCACTAAAGAAGATTTCGCCACCATCTTTACTAGCAGTGAGGATATTATACTAGCTGTCACCGAATTAGCATATCTTCTTGGTATAACAATGCTTCTCAATAGCATATCACAGGTCATTTCAGGTGTGGCCATTGGAAGTGGATGGCAAGTGATGGTTGCTTACATAAACATGGCATGTTATTACATTGTTGGACTCCCAATTGGAATTTTCCTTGGTTTCAAGCAGCATTTAGGGGTCAAGGGTCTCTGGGGAGGCACAATGTGCGGCAGTATTCTGCAGATTTTAGTCCTCTTGCTGATTATTTCGAAGACTAATTGGACCAAAGAGGTGGAGCAAACAGCTCATCGCATGCGAACATGGAACATTGACAACTACCACTAA 1443 0.4172 METPLVSQKFTSESDYSAVKRLKDVKFVLWTETVKIWKIALPVALTHLFQFLTNSSTSIYAGHLGDIQLSSISVSQGVLSSIYFYLLFGMSSALATLCGQAFGAGQIVSTCIYVQRSWIILTITCTILLPVYVYATPVLKLLGQDEEIADLAGTYSIQLIPHMFSFAIVFPTLRFLQAQSKVKVIMCIAFVVLLIQNGLLYMFIHVFGWGVTGLAMVSDIIGWLYALALVVYTIGWNKEEWSGFSWMAFRDLWAFSKLCLASSVMICLEQWYLTCIMLLVGLLQNPVISVASYSICFNVQGWHFTLLLGINTAISVRVSNTLGMSHPRAAKYSFYVAMFQSLLLGILFMTLIFLTKEDFATIFTSSEDIILAVTELAYLLGITMLLNSISQVISGVAIGSGWQVMVAYINMACYYIVGLPIGIFLGFKQHLGVKGLWGGTMCGSILQILVLLLIISKTNWTKEVEQTAHRMRTWNIDNYH 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01035 480 PANTHER MULTIDRUG RESISTANCE PROTEIN 28 460 - -
Vian8g01035 480 NCBIfam MATE family efflux transporter 42 437 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian8g01035 480 Pfam MatE 42 197 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian8g01035 480 Pfam MatE 263 422 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian8g01035 480 CDD MATE_eukaryotic 32 466 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01035 Vian-Chr8 27355591 27358678 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01035 K03327 - gmx:100817098 808.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01035 8 27355591 27358678 Vian8g01035 8 27355591 27358678 ECH
Vian8g01035 8 27355591 27358678 Vian3g00658 3 6674125 6677222 PCT