Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00658 ATGGATGCTCCCCTGCTCGTAAACGGCGATGGGGCGGCGCTGGTGGATCAGGATGGCGACTACGTGGCGGCGAGGGGGTTCAAGAAGGTTAAGGAGGTGTTCTGGATCGAAAGCAAGAAGATGTGGCTCATTGCGCTGCCTATTGTTTTCAACATATGGTGCCAATACGGTACAAACTCTATCACCAGCATCTTCGTCGGACACCTCGGCGACATTGAGCTCTCTGCTATCTCTCTCATCAACTCCGTCATTGGCACTTTCGCCTTTGGTTTCATGCTTGGGATGGGAAGTGCAACAGAGACGCTATGTGGACAAGCTTTCGGAGCTGGGCAGGTTAATATGCTTGGTGTTTATATGCAACGCTCATGGGTGATTTTATCTGTGACCAGCATTTTTCTGTTGCCACTATACATTTTTGCTGCTCCAATTTTGAAGCTTCTTGGTCAGCAGAAAGATATAGCTGATCTTGCTGGAAATTTCGCTATTAAAGTAATTCCGCAATTTCTTTCACTTGCCTTTAATTTTCCAACGCAAAAGTTCCTTCAAGCTCAGAGTAAGGTTAACGTGATTGCATGGATTGGGTTGGGAGCTTTGGTTGTGCATGTTGGGTTGCTCTGGCTCTTAATTCATACGTTAGAGTTAGGCTTAACTGGTGCAGCTTTGGCATTTGATTTCACGAGTTGGGGGATTACAACGGCTCAACTTGTTTATGTCATGGTCTGGTGTAAGGATGGATGGAAGGGATTGTCATGGTCGGCTTTTAAGGATATTTGGGCCTTTGTAAGGCTCTCTCTTGCATCAGCTATAATGCTTTGCCTTGAAGTTTGGTATATGATGAGTGTCATAGTTCTTGCTGGTCACCTTGACAATGCAGTGATTGCTGTTGATTCCCTCTCTATATGCATGAATATCAATGGGTGGGAAGTCATGATCTTCATTGGAATAAATGCAGCTGTCAGTGTCAGAGTTTCCAATGAACTTGGACTCGGACGTCCAAGAACTGCCAAGTACTCTGTCTACGTGACAATCTTTCAGTCACTTTTCTTGGGAATCTTTTTCATGGCTGTTATTTTGGTGGCTAAAGACTATTATGCTGTTATTTTTACTGACAGTCTGGTTTTGCAAAAGGCCGTTTCGAAGCTAGGATTCCTCCTGGCTATTACAATGGTTCTAAACAGTGTTCAACCAGTGATTTCAGGCGTTGCTGTTGGAGGTGGGTGGCAGGCCCTGGTGGCCTACGTCAACATAGGTTGTTACTACTTATTTGGGCTTCCACTGGGGTTCCTTCTTGGTTATAAAGCAAATTTGGGGGTTGAGGGACTTTGGGGTGGTATGATGTGTGGAATTCTTCTTCAGACCTTGCTACTCCTGTTGATACTTTACAAAACCAATTGGAAGAAAGAGGTGGAAGAAACAAATGCTCGCATGCAGATATGGGGTGGACAACAAACTGAGGTTGATAAAATTGCTGCTTCAGCATGA 1482 0.4487 MDAPLLVNGDGAALVDQDGDYVAARGFKKVKEVFWIESKKMWLIALPIVFNIWCQYGTNSITSIFVGHLGDIELSAISLINSVIGTFAFGFMLGMGSATETLCGQAFGAGQVNMLGVYMQRSWVILSVTSIFLLPLYIFAAPILKLLGQQKDIADLAGNFAIKVIPQFLSLAFNFPTQKFLQAQSKVNVIAWIGLGALVVHVGLLWLLIHTLELGLTGAALAFDFTSWGITTAQLVYVMVWCKDGWKGLSWSAFKDIWAFVRLSLASAIMLCLEVWYMMSVIVLAGHLDNAVIAVDSLSICMNINGWEVMIFIGINAAVSVRVSNELGLGRPRTAKYSVYVTIFQSLFLGIFFMAVILVAKDYYAVIFTDSLVLQKAVSKLGFLLAITMVLNSVQPVISGVAVGGGWQALVAYVNIGCYYLFGLPLGFLLGYKANLGVEGLWGGMMCGILLQTLLLLLILYKTNWKKEVEETNARMQIWGGQQTEVDKIAASA 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00658 493 NCBIfam MATE family efflux transporter 47 442 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian3g00658 493 CDD MATE_eukaryotic 37 471 IPR045069 GO:0042910|GO:1990961
Vian3g00658 493 PANTHER MULTIDRUG RESISTANCE PROTEIN 30 465 - -
Vian3g00658 493 Pfam MatE 267 429 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian3g00658 493 Pfam MatE 47 206 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00658 Vian-Chr3 6674125 6677222 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00658 K03327 - gmx:100799559 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00658 3 6674125 6677222 Vian3g00658 3 6674125 6677222 ECH
Vian8g01035 8 27355591 27358678 Vian3g00658 3 6674125 6677222 PCT