Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00556 ATGGGAGAAAATGGCTATGACTCTATATCCTTGTATACCAACAAGCTATATGGAGGTTTACCTCCCCCATCAACTCTAGATATGTTGATTCCAGCCAATGTTGTTGGTAAAGTGCTGGGTAAAGGAGGGACAAATATAGCCAATATCAGGAAGATTGCTAAAGCGACCCTAGTACCAGACACAAGTTATATTGCCAAGCCAGTTGCCTCATGGCTTGATGATTTTCTAGTCTGGGTATCTCCAGAAGTATTTGGGTGTTCTATTCTTGAGCTTGAACTTGATGAATCTCAATCTCAGTTTAAGAAACTCACTTTAGTAGAAAAGTTTGTAATTGCTTCTAATTTGTCTAGGAATATGGTCACCCCATTTCAGTTTTCTTGCAGCTTTCGGATTCTTTCACTGTCTCTACCAACCACTGTTTTTCCAGCTATGGTTCTAGGCACGAGAGGAAAGAACAGAGGAGGTGTCACAGTTCAAATTGATTTCCTCATTCACATTCAGGAGATTAAGCCTTGGCCCCCATCACAGTCTCTAAGATCCCTGCGATCCGTGTTGATAGAGTGGAAAAATGGTGAATGTGCATCAGGTTCTACTACTCCTGTTGCACCCTCTCTTGGTTCAGTTATAGGTGAAGGAAGAATCGAATTCAACAAGTCCTTTAGGCTACATGTGACTTTGTTGAGGGATATGTCTGTAAGAAGTGGTGATACTGATGTGTTCCAAAAGAATTGTTTGGAGTTCAACTTGTATGAGCCACGAAGAGATAGGACTATTAAGGGTCAGTTGTTGGGAACTGCAGTCATAGACTTGGCAGAATATGGGACACTCAAAGAGTCCTTAAGCACTAGTGTTCCTATGAACTGCAAGAGGAGTTACAGGAACACAGAACAGCCACTTCTGTTCCTTAAAATTCAGCCTCTTGATATGAAGCGTGCTAGTTCCTCATCCAAGGAGAATAATGGTGGTGACTCAGTGTCAACACTCATGAATGAAGAATATGCTGAAGAAGCTGAAATTGCCTCTTTTACTGATGATGATGTCTCCTCACATTCGTCTGCAGCTGCAGTTTCTCCTGCCCTTAACTCCAGAGGGTTTACCCCGCTGAAATTAGGAAAGAATGAACCAATTAGCAACACTGGTGTGAAAACCATGGAACATCCCGTGGCCTCGGAAACAAGGCTTGAAAACATGAATATGATGCAGAAAGATACACACCAGAAGCTTGAGAGGAGTTCTTACATGTCATCATTGGATGTATCTTCTATCAGGAGTCTAGTAAATGATCATGCTTCTAACTCTCCTATTCACAATTCATTGTCAATTAAAAAGTTTTCCGCTTCACCAAGTGCCAATACTTCTTCATCATCTTCAATTTTTGAGGATTTGGACATAAATTCTAGAAGCAACACAAGAAGCAGTGGCCATGAAACTTTGGATCAGAGTTTTCAAGAAAAGCTTGCTAACTACAGAAATATAGTTGCAGATGTCCAAAGAAACACAAACGGAAGTACTTTTGGCATTTATTCAAAACAAACATCATCTCAAGATAGAGCTAAATTCACTGGCAAAAGTCCTGGCTTTGAAAACTATGATGAAACTGAATATGGTGACGAATATTCAATGAAGGAGAGTGGAGGTGATAAAATCTTCCATAGTTCTGTTGAGGACATAAGTGGAAATGAAAAATATGATTTGGATAGGCAAAACTGCATTGAGGATGAAAAATTTGAAGCACAAGATGCCAATGATCAAGCCTCAATAGATATCAATACATACTCTTTTGGAGGGTCAAATATTGCTATGCAGGAAAATAATCTCAGAAGTGAAAGACTAAAGAACATCAAGTCTGTGAGGATACCAGCAGACTCGGCTAGGAATACTGGTTCTCCTGGTAGCAATCATCATGCTGAATTAAATGAAAATGGCATTCTTGGGCATTCACAAAACAGTGGAGGGAACAGAAGCAATGAAAGAAGAAATTCTAAGATTCAAACAAAGGAAGCAAGAAATGGTACTTTAGATGGAAAAGTTGAGCAGTTGGAGAAGAAGATAAAGATGCTTGAAGGAGAGTTAAGAGAAGCTGCTGCAGTTGAGTCTGCTTTATATTCAGTAGTTTCTGAGCATGGAAACTCCACAAGTAAAGTTCACGCCCCAGCACGGCGCCTTTCCAGGCTCTATCTTCATGCTTGTAAAGAAAATGTTCCAGGAAGAAGGGCTGGAGCAGCTAAAAGTTCTGTTTCAGGATTAGTACTTGTTGCAAAGGCATGTGGAAATGATGTCCCGAGGTTGACCTTTTGGCTGTCTAATACTATAGCCTTGAGAACAATTATAAGCCGAACCGTCAAAGATCCTTCAAATCCTGCAGGAGCTGGTAGGAGAAGGAAAAGTGATGAGGAGAGGTATGGTAAGGTAACAGCTTCACTAAGGGTGAAGGGGTTTTACCCCAGAAAAGATGAAAATGCAGCATTGGGATATGGAGGTTTTGGTAACTGGGATGATCCCCAGGTACTCCTATTAGCACTGGAAAAGGTGGAAGCATGGATCTTTTCTCGCATTATAGAATCTATCTGGTGGCAGATTTTGATTCCACATATGCAACACACAAAGTTCAACAGCAAAGAAGTGGTTTCAGACCCAAGAAAAAGCTACAGAAGGACTTCTAGCTCATGTGATCAAGAGCAGGGTAACTTGTCTCTATATATTTGGAAGAATGCTTTTAGGGAAGCCTGTGAAAGGATCTGTCCTATTCGAGCTGGAGGGCATGAGTGTGGCTGTTTGCCTATGCTTTCTAGATTGATAATGGAGCAATGTGTTGCCAGATTAGATGTGGCTATGTTCAATGCTATTCTTCGCGAATCTTCTGATGAAATACCAACCGATCCTGTATCTGATGCTGTTAGTGATCCCAAGGTTCTCCCCATTCCACCTGGGAAAATAAGCTTTGGAGCCGGTGCACAGCTAAAAACTGTGTCCTTCAGTCTTCTGAATGCTCTAAGTGACCTTCTAATGCTTCCTAAGGATATGCTGTTAAATGCATCCATCAGAAATGAGGTATGCCCTATGCTCAATGCAACACTTGTCAAGAAGATTCTGCACAATTTTGTCCCAGATGAGCTTTGCCCTGATTCTGTTCCCTCTGATGTCTTTGAAGCTCTGGACTCAGAGAATGAGATGGAAGATGGAAAAGAGCCTGTGAACAACTTTCCATGCATTGCAGGTCCCATTGTGTATTCATCTCCAAGACCATCTTCCATTGCAAGCATTGTGGGAGAGATGGGAAGCAAATATCATCTAAGAAGAAACAGATCATCAATTGTTAGGAAGTCACACACAAGTGATGATGAGTTGGAAGAATTGAAGTCCCCATTGTCTTCAATATTCTTGAGTGCTTCCTCATCCTCAAAACTTTTAACAAAATCCACCTTCAAGTTCAAACAAGTTGGCAACCAATCTCCTCTCAGATATGAACTCCTTAGGGAAGTGTGGATCAACAGTGAGTAA 3501 0.4113 MGENGYDSISLYTNKLYGGLPPPSTLDMLIPANVVGKVLGKGGTNIANIRKIAKATLVPDTSYIAKPVASWLDDFLVWVSPEVFGCSILELELDESQSQFKKLTLVEKFVIASNLSRNMVTPFQFSCSFRILSLSLPTTVFPAMVLGTRGKNRGGVTVQIDFLIHIQEIKPWPPSQSLRSLRSVLIEWKNGECASGSTTPVAPSLGSVIGEGRIEFNKSFRLHVTLLRDMSVRSGDTDVFQKNCLEFNLYEPRRDRTIKGQLLGTAVIDLAEYGTLKESLSTSVPMNCKRSYRNTEQPLLFLKIQPLDMKRASSSSKENNGGDSVSTLMNEEYAEEAEIASFTDDDVSSHSSAAAVSPALNSRGFTPLKLGKNEPISNTGVKTMEHPVASETRLENMNMMQKDTHQKLERSSYMSSLDVSSIRSLVNDHASNSPIHNSLSIKKFSASPSANTSSSSSIFEDLDINSRSNTRSSGHETLDQSFQEKLANYRNIVADVQRNTNGSTFGIYSKQTSSQDRAKFTGKSPGFENYDETEYGDEYSMKESGGDKIFHSSVEDISGNEKYDLDRQNCIEDEKFEAQDANDQASIDINTYSFGGSNIAMQENNLRSERLKNIKSVRIPADSARNTGSPGSNHHAELNENGILGHSQNSGGNRSNERRNSKIQTKEARNGTLDGKVEQLEKKIKMLEGELREAAAVESALYSVVSEHGNSTSKVHAPARRLSRLYLHACKENVPGRRAGAAKSSVSGLVLVAKACGNDVPRLTFWLSNTIALRTIISRTVKDPSNPAGAGRRRKSDEERYGKVTASLRVKGFYPRKDENAALGYGGFGNWDDPQVLLLALEKVEAWIFSRIIESIWWQILIPHMQHTKFNSKEVVSDPRKSYRRTSSSCDQEQGNLSLYIWKNAFREACERICPIRAGGHECGCLPMLSRLIMEQCVARLDVAMFNAILRESSDEIPTDPVSDAVSDPKVLPIPPGKISFGAGAQLKTVSFSLLNALSDLLMLPKDMLLNASIRNEVCPMLNATLVKKILHNFVPDELCPDSVPSDVFEALDSENEMEDGKEPVNNFPCIAGPIVYSSPRPSSIASIVGEMGSKYHLRRNRSSIVRKSHTSDDELEELKSPLSSIFLSASSSSKLLTKSTFKFKQVGNQSPLRYELLREVWINSE 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00556 1166 Coils Coil 663 697 - -
Vian8g00556 1166 MobiDBLite consensus disorder prediction 619 674 - -
Vian8g00556 1166 ProSiteProfiles C2 NT-type domain profile. 150 308 IPR019448 -
Vian8g00556 1166 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 159 283 IPR019448 -
Vian8g00556 1166 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 15 58 IPR036612 GO:0003723
Vian8g00556 1166 Gene3D K Homology domain, type 1 21 86 IPR036612 GO:0003723
Vian8g00556 1166 ProSiteProfiles Type-1 KH domain profile. 23 57 - -
Vian8g00556 1166 MobiDBLite consensus disorder prediction 659 674 - -
Vian8g00556 1166 Pfam KH domain 26 58 IPR004088 GO:0003723
Vian8g00556 1166 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 661 1165 IPR021827 GO:0005643
Vian8g00556 1166 MobiDBLite consensus disorder prediction 620 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00556 Vian-Chr8 9599293 9610418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00556 49 86 Miscellaneous Gene Families AT1G42470 71.053 9.25e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00556 - - vun:114181061 1758.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01560 2 32313982 32319858 Vian8g00556 8 9599293 9610418 PCT