Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00544 ATGTCTGTGAACAATAATAACCCTTCTAAGGGCATTGGGGCATCTTCGTCATCCTTTGGCAATGCTGGAATACCCTCCAATTCTATACCTGCAAACCATGGTTTTTCACAGTCCCAAGGACAAGGCCAGATTCCCGTTGGTTTTCAAGGGCAGTTTCCACTTTCCCAGGCTCATGCTATTGTCCAAGCTCAGTCCAAGGCCCAGGCCCAGGCTCAGGCCCATGCCCAAGCAGCAGCTGCAGCCCATGCTCAAATCCAGGCTCATTTGCAAGCACAGGGGTTGACTCTTAATCAGAACCAAGGTGGTGGTTTGGGGAGTTTGGGGCTGTCGTCGGCTATTTCCACACCGGGAAGTGGGAAACGGATCCCTCTAAAACCCCCAATTCGGCCAGTGGGATTTTCCCCTCCTAACAGCTTCTCCCCTTTGAGACCGATGGAGCTCACACCTGCTTCGCGGAGGAAGAAGCAGAAGCTTCCCGAGAAACAGCTGCAAGATAAAGTGGCAGCTATACTACCTGAGTCTGCACTGTACACACAGCTTCTAGAGTTTGAGTCTCGTGTTGATGCGTCACTTGCTAGAAAGAAGGCTGACATCCAGGAAGCGCTCAAAAACCCACCCTGTATTCAGAAAACTCTTCGCATCTATGTATTTAACACTTTTGCTAATCAAATTCGCACAATTCCAAAGAAGCCGAGTGCAGAGCCTCCAACCTGGACGCTGAAGATAGTTGGAAGGATATTGGAAGATGGTGTAGACCCTGATCAGCCAGGAGTGGTTCAGAAGTCCACTCCTCTGTATCCGAAGTTTTCAGCTTTCTTCAAAAGAGTAACCATTTCTTTAGATCAGAGACTATATCCAGATAATCACATTATTATGTGGGAGAATGCTCGATCACCTGCTCCACATGAAGGTTTTGAAGTAAAGAGGAAAGGGGATAAAGAGTTTACCGTGAATATACGTCTGGAAATGCATTATGTGCCTGAGAAGTTTAAGCTTTCACCAGCTTTGACAGAGGTTCTTGGTATTGAGGTTGATACCCGCCCAAGGATTGTTGCTGCGATCTGGCACTATGTAAAGGCCAGGAAGTTGCAAAACCCTAATGACCCTTCTTTCTTTCACTGTGATCAGCCTCTTCAGAAAGTATTTGGAGAAGAAAAGATGAAGTTTACAATGGTTTCGCAGAAAATATCTTCACATTTATTCCCTCCACAGCCTATACTTTTGGAACACAAGATCAAGCTATCGGGAAACAGTCCAGTTGGGACTGCTTGTTATGATGTGATGGTTGATGTTCCTTTCCCAATTCAGAGGGAGTTGTCTGCTTTATTGGCTAATGTGGAAAAGAACAAAGAGATTGAGACATGTGATGAAGCAATATGTGGAATCATTAGAAAAATTCATGAGCACAGAAGGAGACGGTCATTCTTTCTTGGTTTCAGTCAATCGCCAGTAGAATTTATTAATGCATTGATTGAATCGCAAAGCAGGGATCTGAAACTTGTTTCCGGAGAACCAAGTCGCAATGCAGAGAAAGAGCGTCGATCAGATTTCTTCAACCAACCATGGGTTGAAGATGCTGTTATTCGATATCTGAATCGCAAACCAGCTGTGGGAAGTGATGCTCCAGGAAGCACATGA 1638 0.4548 MSVNNNNPSKGIGASSSSFGNAGIPSNSIPANHGFSQSQGQGQIPVGFQGQFPLSQAHAIVQAQSKAQAQAQAHAQAAAAAHAQIQAHLQAQGLTLNQNQGGGLGSLGLSSAISTPGSGKRIPLKPPIRPVGFSPPNSFSPLRPMELTPASRRKKQKLPEKQLQDKVAAILPESALYTQLLEFESRVDASLARKKADIQEALKNPPCIQKTLRIYVFNTFANQIRTIPKKPSAEPPTWTLKIVGRILEDGVDPDQPGVVQKSTPLYPKFSAFFKRVTISLDQRLYPDNHIIMWENARSPAPHEGFEVKRKGDKEFTVNIRLEMHYVPEKFKLSPALTEVLGIEVDTRPRIVAAIWHYVKARKLQNPNDPSFFHCDQPLQKVFGEEKMKFTMVSQKISSHLFPPQPILLEHKIKLSGNSPVGTACYDVMVDVPFPIQRELSALLANVEKNKEIETCDEAICGIIRKIHEHRRRRSFFLGFSQSPVEFINALIESQSRDLKLVSGEPSRNAEKERRSDFFNQPWVEDAVIRYLNRKPAVGSDAPGST 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00544 545 CDD SWIB_like 332 400 - -
Vian8g00544 545 MobiDBLite consensus disorder prediction 115 145 - -
Vian8g00544 545 Pfam SWIB/MDM2 domain 329 400 IPR003121 -
Vian8g00544 545 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 149 499 - -
Vian8g00544 545 MobiDBLite consensus disorder prediction 1 44 - -
Vian8g00544 545 ProSiteProfiles SWIB/MDM2 domain profile. 325 402 IPR003121 -
Vian8g00544 545 SMART swib_2 326 405 IPR019835 -
Vian8g00544 545 SUPERFAMILY SWIB/MDM2 domain 320 410 IPR036885 -
Vian8g00544 545 Gene3D SWIB/MDM2 domain 322 406 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00544 Vian-Chr8 9436680 9438722 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vian8g00544 SWIB 4.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00544 K11650 - gmx:100776562 953.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01546 2 32092269 32094089 Vian8g00544 8 9436680 9438722 PCT