Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01546 ATGTCTATGAACAACAACTACAATTCTATCAAGCCCCTTGGGGCTTCTTCCTCCGGCTACCCACATCCTCAAATCGCGTCGGGCCAGTACCCTCTGTCCCAGGCCCACGCCATCGTCCAAGCCCAGTTCCAGGCCCAGCTCCAAGCCCACGGGCTTTCCTTCACCCCTAATGCCAAACGTTTCCCTCCAAAACCCCCTGTTCATACCACCACGCCGCTCAAACAAACGGAACCCGTGCCCGGGCCTCGGAGGAAGAAGCCCAAGCAAAATGAGAAACAGCTTCCGGAGAAAGCCTCCGCAATTCTCCCACAGTCGGTACTCTACACGCAGCTCCTCGACGTAGAGGCGCGTGTGGACGCTGCACTTGCTAGAAAGAAGGTTGACATTCAAGAAGCAATGAGAAACCCACCCTGCATCCAGAAAACCCTTCGAATTTTCGTGTTCAACACGTTTTCAAACCAGAATGTGGATTCTTCCGCACCCACATGGACTCTTAAGATTGTTGGAAGGATTTTGGAAGATGGTGAAGAAGCTGAACAACCTGGAGTTGTTGCTCACAGGATGCCACCTTTGTACCCGAAATTTTCTGCCTTTTTCAAAAGGGTAACTATTTCCCTCGACAAGAGGCTGTATCCGGATAACAATGTCATCACATGGGAGAATTCGCGGTCATCTGCTACTCATGAAGGTTTTGAGGTGAAGAGGAAAGGGGATAAGGAGTTCTCGGCGCAGATTCGGTTGGAGATGAATTACGTGCCGGAGAAGTTTATGCTGTCGCCGATGTTGAGGGAAGTGCTTGGTATTCAGGTTGACACGCGGGCAAGGATTGTTTCAGCGATATGGCATTATGTGAAGGCGAGGAAGTTGCAGAACCAGAATGATCCTTCGTACTTTCACTGTGATCAGGCTCTTCAGAAGGTGTTTGGGGAGGATAAGGTGAGGTTCTCGATGGTTTCGCAGAAGATATCACAGCATTTGTTTCCTCCTCAGGTTATTCTTTTGGAACATATGATCAAGCTCTCGGGGAATAGTCCGGTCGGGTCTGCTTGTTATGATGTGATGGTTGATGTTCCTTTTCCCATTCAGAGGGAATTGAATGCTCTGGTGGCCAATGTGGAGAGGAACAAAGAGATTGATGCCTGTGATGAATCCATATGCGGGATCATTAGAAAAATACACGAGCACCGCAGGAGGCGAGCGTTCTATGTTGGTTTTAGTCAATCTCCTCTGGAATTTATTAAGGCCTTGGTTGAATCTCAAAACAAGGATCTCAAAGTTTTACTCGGAGAATCTGGTCACAACGCTGAAATGGAGCGTAAATCAGATTTCTTTAAGCAACCGTGGGTTGAGGATGCTATTGTTCGTTATTTGAATCGCAAACCAGCAGCAGGAAGCAATGTCCCGGGGAGCACATGA 1416 0.4859 MSMNNNYNSIKPLGASSSGYPHPQIASGQYPLSQAHAIVQAQFQAQLQAHGLSFTPNAKRFPPKPPVHTTTPLKQTEPVPGPRRKKPKQNEKQLPEKASAILPQSVLYTQLLDVEARVDAALARKKVDIQEAMRNPPCIQKTLRIFVFNTFSNQNVDSSAPTWTLKIVGRILEDGEEAEQPGVVAHRMPPLYPKFSAFFKRVTISLDKRLYPDNNVITWENSRSSATHEGFEVKRKGDKEFSAQIRLEMNYVPEKFMLSPMLREVLGIQVDTRARIVSAIWHYVKARKLQNQNDPSYFHCDQALQKVFGEDKVRFSMVSQKISQHLFPPQVILLEHMIKLSGNSPVGSACYDVMVDVPFPIQRELNALVANVERNKEIDACDESICGIIRKIHEHRRRRAFYVGFSQSPLEFIKALVESQNKDLKVLLGESGHNAEMERKSDFFKQPWVEDAIVRYLNRKPAAGSNVPGST 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01546 471 CDD SWIB_like 258 326 - -
Vian2g01546 471 MobiDBLite consensus disorder prediction 79 93 - -
Vian2g01546 471 ProSiteProfiles SWIB/MDM2 domain profile. 251 328 IPR003121 -
Vian2g01546 471 MobiDBLite consensus disorder prediction 54 96 - -
Vian2g01546 471 SUPERFAMILY SWIB/MDM2 domain 246 336 IPR036885 -
Vian2g01546 471 SMART swib_2 252 331 IPR019835 -
Vian2g01546 471 Gene3D SWIB/MDM2 domain 248 331 IPR036885 -
Vian2g01546 471 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 85 425 - -
Vian2g01546 471 Pfam SWIB/MDM2 domain 255 326 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01546 Vian-Chr2 32092269 32094089 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vian2g01546 SWIB 7.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01546 K11650 - gmx:100785069 793.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01546 2 32092269 32094089 Vian2g01546 2 32092269 32094089 ECH
Vian2g01546 2 32092269 32094089 Vian8g00544 8 9436680 9438722 PCT