Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01938 ATGGAAGGAATGTTCAGAGCCAATGGTGGTTGTGGTTATGTTAAAAAACCAAACATATTATTGAATGTCAACGATGTTTTTGATCCAAAAGCGCTTCGGCCAGTCCAAACAACTCTTCAGGTTTTGGTATACATGGGTGATGGGTGGCGTTCAGATTTCAGCCCAACCCATTTTGACTTTTATTCTCCTCCTGACTTCCGTGTACAGATCGGCATTCACGGTGTTCCCGCTGATAGAAATATGAAATACACAAGAACAATTGAAGATGATTGGGTACCAGTGTGGAATGAAGAGTTCAGTTTCCCATTGACTACTCCTGAATTGGCTCTTCTATACATCAAAGTTGTTGAGCGTGACTTTTCTGGAAGCGGTGACTTTGGCGGTCAAACATGTTTACCTGTCTCTCAACTCCGACAAGGCATTCGTGCAGTTCGTTTGCGCAACCGCAAGGGCGAACTTTACAAGTCTGTCAGACTTCTCATCCAATTTCGCTTTCTTCCTAACACTCTTTAG 513 0.4327 MEGMFRANGGCGYVKKPNILLNVNDVFDPKALRPVQTTLQVLVYMGDGWRSDFSPTHFDFYSPPDFRVQIGIHGVPADRNMKYTRTIEDDWVPVWNEEFSFPLTTPELALLYIKVVERDFSGSGDFGGQTCLPVSQLRQGIRAVRLRNRKGELYKSVRLLIQFRFLPNTL 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01938 170 Gene3D C2 domain 34 168 IPR035892 -
Vian7g01938 170 FunFam Phosphoinositide phospholipase C 33 166 - -
Vian7g01938 170 Pfam C2 domain 64 140 IPR000008 -
Vian7g01938 170 ProSiteProfiles C2 domain profile. 15 148 IPR000008 -
Vian7g01938 170 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 2 20 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vian7g01938 170 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 1 165 IPR001192 GO:0035556
Vian7g01938 170 CDD C2_PLC_like 37 165 - -
Vian7g01938 170 Gene3D Phosphatidylinositol (PI) phosphodiesterase 1 31 IPR017946 GO:0006629|GO:0008081
Vian7g01938 170 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 38 166 IPR035892 -
Vian7g01938 170 SUPERFAMILY PLC-like phosphodiesterases 1 32 IPR017946 GO:0006629|GO:0008081
Vian7g01938 170 SMART C2_3c 38 146 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01938 Vian-Chr7 31185473 31189958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01938 1 166 Acyl Lipid Metabolism Gene Families AT3G55940 62.651 7.13e-72 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01938 K05857 - gmx:100817915 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01938 7 31185473 31189958 Vian7g01938 7 31185473 31189958 ECH
Vian7g01938 7 31185473 31189958 Vian2g03007 2 50729969 50733929 ECH
Vian7g01938 7 31185473 31189958 Vian7g01569 7 24610643 24616333 ECH