Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01571 ATGGCAACACACAACAAATACAAAAGTTTCATGTTCTTTATCAGAAAGTTCAAGGTCATCGAGCCAGATCCACCTCAGGACCTTGAGGAGGCGTTTTCAAAGTTCACAGGAGGAGGGTCCCACATGTCCGTGGAGCAGCTCCACCGTTTCATGGTGGAGCACCAGGGTGAAGAGCACCACACCTTATCGGATTCGGAAAAAGTTTTTGAGAGGATTTTGCAGGAGAGAAAGACATGTCAAGAAACTGTTAAGATTGATCACAGCACAGAACATGAGATCACCCTGGATGAGCTCTTCCGATTTTTGCTTCATAATGATTTCAATGGTCCCTTGAAAACTCAGGTACATCACGATATGGGTGCTCCATTGTCACATTATTTCATATATACAGGCCACAACTCCTATTTGACAGGGAATCAACTCAGCAGTGATTGCAGTGAAGAGCCAATAATAGAGGCTTTGAAACGAGGAGTTCGTGTTATAGAACTTGATCTATGGCCAACTTGCAATAAGGATTATATTAAAGTAGATCATGGATGGACTTTTACCAATCCTGTCTCAGTGGTGAAATGTCTAGAGTGCATAAAGGAATATGCTTTTGTTGCATCTCCGTACCCTGTGATCATAACCATAGAAGACCATCTCACAACAGATCTTCGAGCTAAATTTGCAGAACAGAATGGCAGTGATCGTGATGAGGGAAGCATAAGTGCAAGCGAATATGACCAGAAACCATATCTGGAGTGTTCACCTGATTACAAACGCATAATTACTATCCATAACAGGAAACTGAAGGGTTGCCTGAAGGATAAATTGAGAACTGAAGGTGAAGTTAGACGCCTAAGTTGGAGTGAGAATACTCTTGAAAAGGCTTCAGAATCTCATGGAGCAGATATTCTTAGGTTCACACAGAAAAATATCCTCAGGGTGTACCCGAGTGCAATGCGTGTCAAATCCACAAATTTCAAGCCACATATTGGGTGGATGTATGGGGCTCAGATGGTGGCATTCAATATGCAGGGCCATGGCAAATCGCTCTGGTTGATGCAGGGAATGTTCAGGGCAAATGGAGGATGCGGTTATGTAAAGAAGCCTCAAATTCTGATGCAGAAGCATCAATGTGACAATGAGTATGATCCTACAAAGATAGAGTCAATGAAAAAAACATTAAAGGTCAAAGTATACATGGGACATGGATGGAGCTCAGATTTCAGTCCTACACACTTTGATAAGTGCTCTCCGCCAGACTTCTTCACTAAGATCCGAATTATTGGAATGCCTGGTGATGTTGCAAAGAACAAAACAAAGGTCATCATGGACAACTGGTTTCCTGTTTGGAATGAAGAATTTGAATTCTGTTTAAGTGTTCCAGAGCTTGCAATGCTTATGATACAAGTAAAGGATAAAGATCAAGGAATGGATGACTTTGCTGGGCAGACATGTTTACCAGTGTCAGAGTTAAAACATGGATTTCGCTCAGTGCCTTTATACGACAAAAAGGGAGAGAAATTTAAATCTGTGAAGCTGTTGATGCGATTTCAGTTTGAATGA 1551 0.4165 MATHNKYKSFMFFIRKFKVIEPDPPQDLEEAFSKFTGGGSHMSVEQLHRFMVEHQGEEHHTLSDSEKVFERILQERKTCQETVKIDHSTEHEITLDELFRFLLHNDFNGPLKTQVHHDMGAPLSHYFIYTGHNSYLTGNQLSSDCSEEPIIEALKRGVRVIELDLWPTCNKDYIKVDHGWTFTNPVSVVKCLECIKEYAFVASPYPVIITIEDHLTTDLRAKFAEQNGSDRDEGSISASEYDQKPYLECSPDYKRIITIHNRKLKGCLKDKLRTEGEVRRLSWSENTLEKASESHGADILRFTQKNILRVYPSAMRVKSTNFKPHIGWMYGAQMVAFNMQGHGKSLWLMQGMFRANGGCGYVKKPQILMQKHQCDNEYDPTKIESMKKTLKVKVYMGHGWSSDFSPTHFDKCSPPDFFTKIRIIGMPGDVAKNKTKVIMDNWFPVWNEEFEFCLSVPELAMLMIQVKDKDQGMDDFAGQTCLPVSELKHGFRSVPLYDKKGEKFKSVKLLMRFQFE 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01571 516 Gene3D - 24 109 - -
Vian7g01571 516 SUPERFAMILY PLC-like phosphodiesterases 117 370 IPR017946 GO:0006629|GO:0008081
Vian7g01571 516 SMART plcx_3 117 262 IPR000909 -
Vian7g01571 516 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 117 225 - -
Vian7g01571 516 SMART C2_3c 389 496 IPR000008 -
Vian7g01571 516 ProSiteProfiles C2 domain profile. 368 498 IPR000008 -
Vian7g01571 516 Pfam Phosphatidylinositol-specific phospholipase C, X domain 119 225 IPR000909 -
Vian7g01571 516 PRINTS Phospholipase C signature 122 140 IPR001192 GO:0035556
Vian7g01571 516 PRINTS Phospholipase C signature 328 346 IPR001192 GO:0035556
Vian7g01571 516 PRINTS Phospholipase C signature 148 168 IPR001192 GO:0035556
Vian7g01571 516 PRINTS Phospholipase C signature 482 492 IPR001192 GO:0035556
Vian7g01571 516 PRINTS Phospholipase C signature 307 328 IPR001192 GO:0035556
Vian7g01571 516 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 282 368 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vian7g01571 516 Gene3D Phosphatidylinositol (PI) phosphodiesterase 227 382 IPR017946 GO:0006629|GO:0008081
Vian7g01571 516 Gene3D Phosphatidylinositol (PI) phosphodiesterase 113 226 IPR017946 GO:0006629|GO:0008081
Vian7g01571 516 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 242 515 IPR001192 GO:0035556
Vian7g01571 516 Gene3D C2 domain 384 516 IPR035892 -
Vian7g01571 516 CDD C2_PLC_like 387 516 - -
Vian7g01571 516 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 389 515 IPR035892 -
Vian7g01571 516 FunFam Phosphoinositide phospholipase C 384 516 - -
Vian7g01571 516 Pfam C2 domain 389 490 IPR000008 -
Vian7g01571 516 SUPERFAMILY EF-hand 7 119 IPR011992 -
Vian7g01571 516 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 280 366 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vian7g01571 516 SMART plcy_3 253 369 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01571 Vian-Chr7 24632529 24636018 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01571 16 515 Acyl Lipid Metabolism Gene Families AT5G58690 45.326 1.33e-169 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01571 K05857 - gmx:100799027 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03005 2 50713771 50717892 Vian7g01571 7 24632529 24636018 PCT