Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03005 ATGAAACCAGATAAACACAGAGGCTCTTTTACCAAGGGAAGGGTGAGAATGAAAATTGAATCATTCAAGATCAAGATGTTAAATTTCTTGACCAAAAGGGAGAAAGCTTGCAAGGCAGAACATCCTTTGGACCTTAAGGAAGCCTTTTCCAAGTTTGCGAGAGGAGGGAGCCAAATGAACAAGGATCAGCTTCTTCGGTTCATTGTGGAGCACCAGGGAGATAATATCAGCGGCGAAGAGGATTTGGATAAAATAGTTGAGAGTTTTTTAGTAGCACGGAGTTGTAGTTCTAGCTCTAGAACTAGATCTGCAAGATTTCCTGATGTGTACAGTAAACAAGGGTTAACTCTCAATGACTTCGTCGATTTTCTGCTTCTGCATGATTTCAATGCCGCCTTGAATGACAAGGTTCATCATGATATGAATGCTCCCATGTCACATTATTTTATGTATACGGGACATAATTCCTATCTGACTGGGAATCAATTTACTAGTGAGAGCAGTGACGAGCCAATTATTGAGGCTTTGAAACAGGGTGTACGAGTAATTGAACTAGATTTATGGCCATCTAAATCTTCAACTAAAGATGGCATTAAAGTGGTTCATGGAAGGACTTTTACCACTCCAGTCGCCGTACGCACATGTCTAAAATCCATAAAGAAATATGCATTTTATAAATCAGATTACCCAGTAATTCTTACTTTGGAAGACCACCTAAAACCAAAACATCAGGATAAATTTGCAGAAATGGCATTTGAAATATTTGGAGAAATGCTTTATTGTCCCCAAACAGAGTCTTTGACAGAATTCCCCTCACCAGAATCGTTGAAAAAACGGATAATTATATCAACCAAACCACCAAAGGAATTGCAGCAATCTGATAGTATCAGCAAAAGCAAAGCTGGGCCAAATGAATGTGAAACCCCTGACGAAGAATTTTGGGGACTGGAATTGTCAGATTCTGTGTCTAAACCAACTGAGGACAAGGGGAATGCACGTGATGCAGATCAGGAAAATATAAACACAAGCAATAACATTCCAAACAAACAAGGTGTATTGCGATACAAACACTTGATCACAATCCATGGTGGGAAAACAAAAGGTTCCATCAAGGATCAACTAAAAGATGATACTAAAGTTAAACGGCTGAGTTTGAGTGAGAAGAAACTAAAAAGTGCTTCTGAGTCTCATGGAGCCGACCTTATTAGGTTCACACAGAAAAATATCCTCAGGGTTTATCCTAAAGGAGAACGTGTCAAATCCTCAAATTTCAGGCCACATTTAGGGTGGATGTATGGAGCTCAGATGGTTGCATTCAATATGCAGGGGCATGGAAAATCACTCCGGTTGATGCAGGGAATGTTCAGAGCAAATGGAGGGTGTGGTTATGTTAAAAAGCCTGAATTTATAATCCGAACACTTCCACATGACGAGGTGTTTGATCCTAAAAAACAACTGCCAGTGAAGGAGATCTTAAGAGTAAAAGTCTACAAAGGAGATGGTTGGAATTTAGATTTCAGTCCAACACACTTTGATCGATTCTCTCCACCAGACTTTTACACAAAGGTGTGCATTGTTGGAGTGCCAGCTGATTGTGTGAAGAAGAAAACAAAAGTAAATATGGACACATGGTATCCTGTTTGGGATGAAGAGTTTAAATTCGAATTGAGGGTTCCTGAGCTTGCTTTACTTCGGATAGAAGTGAAGGACAAAGATAAGGGAAAAGATGACTTTGCAGGACAAACTTGTTTGCCAGTATCAGAGCTCAGGCAGGGATTCCGGTCAGCCCCTCTGTTTGACCCCAAGGGAAAGAAATTGAAATCTGTGAAACTTCTAATGCGCTTCAAGATTGAAACTTTAAATAACTCGTCGATATCACTCATTTAA 1887 0.3985 MKPDKHRGSFTKGRVRMKIESFKIKMLNFLTKREKACKAEHPLDLKEAFSKFARGGSQMNKDQLLRFIVEHQGDNISGEEDLDKIVESFLVARSCSSSSRTRSARFPDVYSKQGLTLNDFVDFLLLHDFNAALNDKVHHDMNAPMSHYFMYTGHNSYLTGNQFTSESSDEPIIEALKQGVRVIELDLWPSKSSTKDGIKVVHGRTFTTPVAVRTCLKSIKKYAFYKSDYPVILTLEDHLKPKHQDKFAEMAFEIFGEMLYCPQTESLTEFPSPESLKKRIIISTKPPKELQQSDSISKSKAGPNECETPDEEFWGLELSDSVSKPTEDKGNARDADQENINTSNNIPNKQGVLRYKHLITIHGGKTKGSIKDQLKDDTKVKRLSLSEKKLKSASESHGADLIRFTQKNILRVYPKGERVKSSNFRPHLGWMYGAQMVAFNMQGHGKSLRLMQGMFRANGGCGYVKKPEFIIRTLPHDEVFDPKKQLPVKEILRVKVYKGDGWNLDFSPTHFDRFSPPDFYTKVCIVGVPADCVKKKTKVNMDTWYPVWDEEFKFELRVPELALLRIEVKDKDKGKDDFAGQTCLPVSELRQGFRSAPLFDPKGKKLKSVKLLMRFKIETLNNSSISLI 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03005 628 Gene3D C2 domain 486 627 IPR035892 -
Vian2g03005 628 ProSiteProfiles C2 domain profile. 471 600 IPR000008 -
Vian2g03005 628 Pfam Phosphatidylinositol-specific phospholipase C, X domain 141 285 IPR000909 -
Vian2g03005 628 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 491 616 IPR035892 -
Vian2g03005 628 Gene3D Phosphatidylinositol (PI) phosphodiesterase 137 484 IPR017946 GO:0006629|GO:0008081
Vian2g03005 628 SMART plcy_3 355 471 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vian2g03005 628 Gene3D - 38 136 - -
Vian2g03005 628 Pfam C2 domain 491 592 IPR000008 -
Vian2g03005 628 PRINTS Phospholipase C signature 430 448 IPR001192 GO:0035556
Vian2g03005 628 PRINTS Phospholipase C signature 584 594 IPR001192 GO:0035556
Vian2g03005 628 PRINTS Phospholipase C signature 269 286 IPR001192 GO:0035556
Vian2g03005 628 PRINTS Phospholipase C signature 144 162 IPR001192 GO:0035556
Vian2g03005 628 PRINTS Phospholipase C signature 170 190 IPR001192 GO:0035556
Vian2g03005 628 PRINTS Phospholipase C signature 409 430 IPR001192 GO:0035556
Vian2g03005 628 MobiDBLite consensus disorder prediction 286 302 - -
Vian2g03005 628 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 384 470 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vian2g03005 628 CDD C2_PLC_like 489 618 - -
Vian2g03005 628 FunFam Phosphoinositide phospholipase C 486 618 - -
Vian2g03005 628 SMART C2_3c 491 598 IPR000008 -
Vian2g03005 628 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 139 285 - -
Vian2g03005 628 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 376 469 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vian2g03005 628 MobiDBLite consensus disorder prediction 283 348 - -
Vian2g03005 628 SMART plcx_3 139 285 IPR000909 -
Vian2g03005 628 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 27 617 IPR001192 GO:0035556
Vian2g03005 628 SUPERFAMILY PLC-like phosphodiesterases 139 471 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03005 Vian-Chr2 50713771 50717892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03005 21 618 Acyl Lipid Metabolism Gene Families AT2G40116 53.195 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03005 K05857 - gmx:100803435 964.526
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03005 2 50713771 50717892 Vian2g03005 2 50713771 50717892 ECH
Vian2g03005 2 50713771 50717892 Vian7g01571 7 24632529 24636018 PCT