Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01545 ATGCCAATAACAATGACAAACTCTGAAGAACCCTCCCTTCCCAACCCTAACAATAACACTCAAGACTCCACCAACAGCGATGCGGAACCTCACCACCACCACGATATTGAAGATGATGAAGAAGAAGAAGATGACGAATACGACGAGGAGGACGACGTCGTTCAGCAACCGAATCGCACAATTCCCCAATCCGCAGCGTCCAAGCTGCGCGAGCAGCGTTTCAAGGTGGAAACCCTATCGCGGCGGTTGTCGTCGGAGCTTGTTCCGATCCGAGTGCATGACGTGGTCATAAACGGCAACACTAAGACCAAGGATTGGGTTATTGTGGCGGAGCTCGGAGGCATAGAGAACGCCACCAGCATGCAGGAGCTCGTGCAAGTTTCGCAAATCGCCATTTCCAGGCTACAGGACCTCGAAATCTTCGATTCCTGCACGGTTCGCCTTGAGGCTGGGCCCCGAGAACTTCCAAACACTGCCAATGTCATCGTCGACGTTGTCGAAACCGGTAACAAAGTTTCAGCCAAATTCAGCGTTTATAACAAACCCTCGACTAGTTCTTGGACAGCTGAAGGTGCTCTTACGTATAAGAACTTCTTGGGCTATGGTGATCTATGGGATGCTTCTTTGGCCTATGGTGCCAACCAAGCGACTGAGGTGAGCATCGGGGTGCATGCCCCTCGAGTTAGAAGGTTTTTAACTCCTTTTGTGGCACGGCTATCCATGCTTTCCCAAGATTGGCAAGAGACTTCCTCGTACAAAGATCAGTTAGTGGGTGCGTCTCTTGGGTTGATCTCGACCAAGCACCATGACCTAGCATACACTCTTGGATGGCGTACCTTGGCAGATCCATCACAGATGTCATCCAGGTCTATAAGAAGGCAGCTTGGTCATAGTTTAGTGTCTTCTTTGAAGTATACATTTAAAGTTGATAGGAGAAATTCTCCTATCAGGCCAACAAAAGGATATGCTTTTCTTTCCTCCACTCATGTTGGTGGCCTCACTCCAGATCCACGGAGCTTGTGGTTTCTGCGCCAGGAGTTTGATGTTCGCTTTGCTGTCCCTTTTGGGTTTTACAATACAGCATTGAACCTTGGGATATCTGCTGGTGCTGTTTTTCCATGGGGACATGGATTCAAATCCAAGCCATCTCCCCTTCCAGAAAGGTTTTATTTGGGTGGTGATTTTTCTCCAGTTTGCACCCTAGGAGGGCCAACAACCTTATGGGGATTTAAAACTAGAGGATTAGGTCCCACTGAACCTCGTAGGCCAAATAGAGATGAATCCGATGATGAGAATTCCTCTGGATGGGACTTCATTGGTGGAGATCTTGCTGTTACTGCTTTTGCTGATCTCTCGTTTGATCTTCCAATTAGGTGGTTGAGAGAATATGGAATACATGGTCATGTTTTTGCTGGTTCTGGGAATGCTGCTAAATTAACTCAGAATGAATATAGGCACTTCTCTCCTCGGAAGTTCTTGGAATCTTTTCGAGTGTCAGTGGGATGTGGATTTGTTATTCCTACTAGCCTCTTCCGCCTAGAGGGTAACTACGTTCACATACTCAGAAAGGGTGAGCAAGATCGTGGGAAGACTGGATTTAGGTTTAGTTTCTCAGCTCCTTTGTAG 1626 0.476 MPITMTNSEEPSLPNPNNNTQDSTNSDAEPHHHHDIEDDEEEEDDEYDEEDDVVQQPNRTIPQSAASKLREQRFKVETLSRRLSSELVPIRVHDVVINGNTKTKDWVIVAELGGIENATSMQELVQVSQIAISRLQDLEIFDSCTVRLEAGPRELPNTANVIVDVVETGNKVSAKFSVYNKPSTSSWTAEGALTYKNFLGYGDLWDASLAYGANQATEVSIGVHAPRVRRFLTPFVARLSMLSQDWQETSSYKDQLVGASLGLISTKHHDLAYTLGWRTLADPSQMSSRSIRRQLGHSLVSSLKYTFKVDRRNSPIRPTKGYAFLSSTHVGGLTPDPRSLWFLRQEFDVRFAVPFGFYNTALNLGISAGAVFPWGHGFKSKPSPLPERFYLGGDFSPVCTLGGPTTLWGFKTRGLGPTEPRRPNRDESDDENSSGWDFIGGDLAVTAFADLSFDLPIRWLREYGIHGHVFAGSGNAAKLTQNEYRHFSPRKFLESFRVSVGCGFVIPTSLFRLEGNYVHILRKGEQDRGKTGFRFSFSAPL 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01545 541 Gene3D membrane protein fhac 89 168 - -
Vian7g01545 541 FunFam Outer membrane OMP85 family protein 179 539 - -
Vian7g01545 541 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 182 539 - -
Vian7g01545 541 MobiDBLite consensus disorder prediction 1 70 - -
Vian7g01545 541 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 37 538 IPR039910 -
Vian7g01545 541 Pfam Omp85 superfamily domain 197 538 IPR000184 GO:0019867
Vian7g01545 541 MobiDBLite consensus disorder prediction 418 432 - -
Vian7g01545 541 MobiDBLite consensus disorder prediction 411 433 - -
Vian7g01545 541 MobiDBLite consensus disorder prediction 1 25 - -
Vian7g01545 541 FunFam Outer membrane OMP85 family protein 89 168 - -
Vian7g01545 541 MobiDBLite consensus disorder prediction 38 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01545 Vian-Chr7 24273225 24277675 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01545 K07277 - gmx:100802876 901.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01545 7 24273225 24277675 Vian7g01545 7 24273225 24277675 ECH
Vian2g03022 2 50901776 50905964 Vian7g01545 7 24273225 24277675 PCT