Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03022 ATGGAAAACTCGGACGAAAGAAACGAATCACTTCCTTTCTCTCCAAACCCTAACAATGCCGACGACAATGAAATCGACGAACAAGAAGACGAAGAGGAAGAGGAAGAAGATGACGGTCACGACGACGTCGTTTCACACGAGCCGTACAATCGGAACGACCGATCCTCATTGTCCAGTTTGCGCGAGCAGCGTTTAAAGCTGGAAGCCCTCTCCCGGCGATTGGCTTCGGAGCTGGTCCCTATCCGCGTCCACGATGTGCTGATTCGAGGCAACACCAAGACCAAGGATTGGGTGATTGAGGCGGAGCTCAAGCTTCTCCAGGACGCCGCCACCGTGCAGGAGCTCATTCGCGCCTCCGAAACCGCCCTCGCCAGGCTCCGCAGCCTCGAGATTTTCGAGTCCACCGAGCTCACGCTCCAGGCTGGGCCGCCGGAGCTGCCTCACACCGCCAATGTCATCGTCGACGTTGTCGAGACCGCCAACAAAGTTTCCGGCGAATTTGGCGTTTACACCAAACCCTCGACAAGTTCGTGGACTGCTGAAGGTGGTCTTAAGTACAAAAACTTGTTAGGTTATGGCGATCTATGGGATGCCTCTTTGGCCTATGGTGGCAACCAAGCAACAGAGGTGAGTGTAGGAGTGTTTGCTCCAAGACTGAAAGGGTTGTTAACTCCTCTTGTAGCACGACTTTCCATGCTTTCCCAAGATTGGCAAGAGTTTTCTTCATACAAAGAGCAGCTGTTAGGATTGTCTCTTGGCTTAATCTCAACCAGGCACCATGACTTAGTCTACACTCTTGGATGGCGTACCTTGACTGATCCATCTCAAATGTCATCCAGGTCTATAAGGAGGCAGCTTGGGCATGGTTTATTATCATCTTTGAAGTATACATTTAAAATTGACAGGAGAAACTCGCCAATTAGGCCTACAAGTGGATATGCTTTTCTTTCCACTACTCACTTTGGTGGCCTTACACCAGATCATCGGAGCTTGAGATTCCTGCGCCAGGAATTTGATGTTCGCTGTGCCATCCCCCTTCCGTTTTATAACACAGCTCTTAACCTTGGGATTTCAGCTGGTGCCATTTTTCCATGGGGGCATGACTTCATGAACAAGCCATCTCCTCTTCCTGAAAGGTTTTATTTGGGTGGTGATTTCTCTCCAGTTTGCACTCTGGGAGGGCCAATAACATTGTGGGGATTTAAAACTAGGGGACTAGGTCCTACTGAACCACGAAGGAGAATTAGAAACGAAATTATTGATGACAATGACGATTCCACTAAACGGGACTTCATTGGAGGAGATGTTGCTGTTACGGCATTTGCAGACCTGTCTTTTGATCTCCCAATTAGGTGGTTGAGAAATCATGGAATCCATGGTCATCTTTTTGCTGGTGCTGGGAATACGGCAAAATTGACTCAGAATGAATATAGGCGCTTTTCACCTCGGAGGTTCTTAGAATCATTCCGAACATCTGTTGGATGTGGTTTTGTTGTTCCTACTAAACTTTTTCGCCTAGAGGGTAACTTCTACCACGTGCTCAAGCAGGATGAATATGACCGTGGGAAGACAGGATTTAGGTTCAGCTTCTCAGCTCCTTCTTAG 1605 0.4847 MENSDERNESLPFSPNPNNADDNEIDEQEDEEEEEEDDGHDDVVSHEPYNRNDRSSLSSLREQRLKLEALSRRLASELVPIRVHDVLIRGNTKTKDWVIEAELKLLQDAATVQELIRASETALARLRSLEIFESTELTLQAGPPELPHTANVIVDVVETANKVSGEFGVYTKPSTSSWTAEGGLKYKNLLGYGDLWDASLAYGGNQATEVSVGVFAPRLKGLLTPLVARLSMLSQDWQEFSSYKEQLLGLSLGLISTRHHDLVYTLGWRTLTDPSQMSSRSIRRQLGHGLLSSLKYTFKIDRRNSPIRPTSGYAFLSTTHFGGLTPDHRSLRFLRQEFDVRCAIPLPFYNTALNLGISAGAIFPWGHDFMNKPSPLPERFYLGGDFSPVCTLGGPITLWGFKTRGLGPTEPRRRIRNEIIDDNDDSTKRDFIGGDVAVTAFADLSFDLPIRWLRNHGIHGHLFAGAGNTAKLTQNEYRRFSPRRFLESFRTSVGCGFVVPTKLFRLEGNFYHVLKQDEYDRGKTGFRFSFSAPS 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03022 534 Pfam Omp85 superfamily domain 188 531 IPR000184 GO:0019867
Vian2g03022 534 MobiDBLite consensus disorder prediction 1 58 - -
Vian2g03022 534 Gene3D membrane protein fhac 80 159 - -
Vian2g03022 534 Coils Coil 57 77 - -
Vian2g03022 534 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 31 530 IPR039910 -
Vian2g03022 534 FunFam Outer membrane OMP85 family protein 80 159 - -
Vian2g03022 534 FunFam Outer membrane OMP85 family protein 170 532 - -
Vian2g03022 534 MobiDBLite consensus disorder prediction 22 41 - -
Vian2g03022 534 Coils Coil 18 38 - -
Vian2g03022 534 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 164 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03022 Vian-Chr2 50901776 50905964 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03022 K07277 - gmx:100785408 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03022 2 50901776 50905964 Vian2g03022 2 50901776 50905964 ECH
Vian2g03022 2 50901776 50905964 Vian7g01545 7 24273225 24277675 PCT