Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01130 ATGGATATTTCTCACTATACAAGGATTGTCTTTGACAAAATTCATAAATTTGAGCCAGAGCATGCTAGAAAGATAATCGGTTATCTCCTTCTACAAGACCATGGAGAACTAGAAATGGCAAAATGGGCTTCGTACCCTGACTGTTACATCCGTGAAGTGGCATTTCAGGCCAAAAGGGAGCTTCTCAGATTGTCTGCGAAACCAGATATCCTTCCAATTTCACATATGGTCAACCCTCAACAAGGTTATGGCCATTTAGCAATAATGTCTCCTAGAACTCCTACTACACCAAACTTTCAGGTTCCCCCTCTCTATTGGGATCCACAACCTGCTGGCAATATCAATCAAGACTTTATGGCAATGAATTACATGGATTCTGTCATTGAGCTTCAGAAGCAGACACAATTGTGCAGTTTGGAGAATCGTATAGATGCTGTAAAGACTGGGACTGTAGGGGTTGCCAACGATTACTATAGAGATGCTTCTGCTGCCAATTTGGGTGGCAAAGCTGGGAAAAGGTTTTCTGAATATCCAATGAAAGTTTGTCACTATTTCAACAAAGGATTCTGCAAACATGGAAATAACTGCAGATTCTACCATGGGCAAGTTGCCCCTGAGAATTTATCTCAGATGTATGGAAGTGATGCTAGTGGTGAGGATCAGGTGATTTCCCCAGGGTCACTGGCACAGCTAGAGAAAGAAATTATTGAGCTTCTAAGATCAAGGGATGATGCAATATCGATTGCTTCTCTGCCAATGGCGTACTATGATAGATATAAGAAGGTACTGCAAGCAGATGGTTATTTAACTGAGAGCCAAAGACACGGTAAGTCTGGCTATAGTTTGACAAAGCTTCTTGCGCGACTGAAAAATAGTATTCGGCTAATAGTGAGACCTCATGGGCAGCATTCAGTGACTCTGGCAGAAGATGCTCCCACACAAATGAAGAAGGGAGAGTTTCCTCGAAATATCAGTGCTTCACGACAGATATATCTGACATTTCCGGCTGACAGCACTTTCACAGAGGATGATGTCTCAAACTACTTCAACACATTTGGGCCTGTTGCAGATGTTAGAATTCCAAACCAGCAGAGAAGGATGTTTGGATTTGTGACATTTGCTCATTCAGAAACTGTCAAAACTGTTTTGGATAAAGGGAATCCTCATTGTGTTCGGGGTTCTCGGGTTCTTGTGAAACCTTACCGGGAGAAAGCAAAGATTAATGAAAGGAAGTTCACAGATAGACTTGAGCACACGTTTTGTTATTCACCACACTGTGTAGATACAGATTCTGAACTTAACTCAACTCCAAGAAGTTTGGGGAACCATAAATCTTTTAGGAGGCAGCTGCAAGAGCAAGAACAGGCCCTGGAACATGAGAGGAGAAGCCTTGCACAACTGCAGTTTTCCTCAAAACCTTTATCCAGCTCACCTCATTTTGGTTTCTCCTTGGATGAGACAAGAGTTTCAGATGATCACTTCAATCTTCAGCCACCAGAAGAATCTTTCCGTTTTCCACTGCATGCCAAATCCATACATACAGACGACAATTTCTCTGATGAGGAAAGCTATCAAGGCCTCAACCTCCCAGACAGTCCATTCGCGTTTCCAATAGATAGTGAGATGTAA 1629 0.4242 MDISHYTRIVFDKIHKFEPEHARKIIGYLLLQDHGELEMAKWASYPDCYIREVAFQAKRELLRLSAKPDILPISHMVNPQQGYGHLAIMSPRTPTTPNFQVPPLYWDPQPAGNINQDFMAMNYMDSVIELQKQTQLCSLENRIDAVKTGTVGVANDYYRDASAANLGGKAGKRFSEYPMKVCHYFNKGFCKHGNNCRFYHGQVAPENLSQMYGSDASGEDQVISPGSLAQLEKEIIELLRSRDDAISIASLPMAYYDRYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIVRPHGQHSVTLAEDAPTQMKKGEFPRNISASRQIYLTFPADSTFTEDDVSNYFNTFGPVADVRIPNQQRRMFGFVTFAHSETVKTVLDKGNPHCVRGSRVLVKPYREKAKINERKFTDRLEHTFCYSPHCVDTDSELNSTPRSLGNHKSFRRQLQEQEQALEHERRSLAQLQFSSKPLSSSPHFGFSLDETRVSDDHFNLQPPEESFRFPLHAKSIHTDDNFSDEESYQGLNLPDSPFAFPIDSEM 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01130 542 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 538 - -
Vian7g01130 542 SMART rrm1_1 329 399 IPR000504 GO:0003723
Vian7g01130 542 SMART c3hfinal6 176 202 IPR000571 GO:0046872
Vian7g01130 542 ProSiteProfiles OST-type HTH domain profile. 227 309 IPR025605 -
Vian7g01130 542 Pfam OST-HTH/LOTUS domain 227 305 IPR025605 -
Vian7g01130 542 Gene3D - 329 408 IPR012677 -
Vian7g01130 542 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 178 202 IPR000571 GO:0046872
Vian7g01130 542 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 335 406 - -
Vian7g01130 542 SUPERFAMILY RNA-binding domain, RBD 338 409 IPR035979 GO:0003676
Vian7g01130 542 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 328 403 IPR000504 GO:0003723
Vian7g01130 542 Gene3D - 172 234 - -
Vian7g01130 542 Coils Coil 228 248 - -
Vian7g01130 542 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 339 395 IPR000504 GO:0003723
Vian7g01130 542 Coils Coil 443 470 - -
Vian7g01130 542 CDD RRM_AtC3H46_like 330 399 IPR034365 -
Vian7g01130 542 ProSiteProfiles Zinc finger C3H1-type profile. 176 203 IPR000571 GO:0046872
Vian7g01130 542 SUPERFAMILY CCCH zinc finger 178 201 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01130 Vian-Chr7 19516247 19519708 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01130 - - gmx:100818984 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01130 7 19516247 19519708 Vian7g01130 7 19516247 19519708 ECH
Vian6g00452 6 18888946 18892170 Vian7g01130 7 19516247 19519708 PCT