Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00452 ATGTCAGGTGAAGCTCTGAGATATGTAGAAGAGAAAAGGGTTGTTGAAAGATCTGTGCTTGAAGCACTTTCAGCTATGGATATTTCAGAGTACACAGGTATAATTTTAGGTAAACTTCAGAAATTTGAGCCTGAGAACGCCTCAAAGATCTTAGGGTATCTCCTTGTCCAAGAACATGGGGAAGAAGAAATGGCGAAATTGGCTTCACTCCCTGACCATTTAATCGGTGAAGTGGCGTTCCAGACCAGAACCAAGCTTCCAAGGTCAGCTGCTAGATCAATCATTCCTCCAATTTCACCTCCCATGAACTGTCAACCAGGTTTTTCCCAGTTTTCAGTAATCTCCCCTACTTCAGTAATCACAGCTGACACCCCTACCACAGCGCCAAGCTTCCAGCTTCAATCTCCCTTCTGGGATCCTCAGTCTGTTAACAATGCCAATGCAGAATATATGGCACAGGGTTATTTGGATTCCATCTCTGAACTTCAAAAGCAAACTCCGTTCTTCACTCTGGAGAATCATATGGATGCTGTAAATTCTCGTGCTGTTGGGACTTCAGGCACTCCAAGTATTTCTAATGATTACTATGGCTTAGATGCTTTATCAGTTGGTAATTTGGGTGGAAAAGCTGGTAGAAGGTTCGACCATCCAGTCAAGACCTGTCACTACTTTAACAAAGGATTTTGTAAGCATGGAAATAGCTGTAGATACTATCATGGACTGGGCCCCCCTGATGCATTCCCTCACATGTATGGAAATGATAGTTTTAATGATGATCAGATGATTTCACCTGGGTCACTGGCACAACTAGAGTCTGAAATTGTTGAACTCCTGAAACTGAAAAAGGGTGGTTCTATATCAATTGCTTCCCTTCCAATGGCATACTTTGAGAAGTATAAGAAGGTGCTGCAGGCTGATGGCTACCTCACTGAGAGTCAGAGACATGGAAAATCTGGCTACAGTTTGACTAAGCTTCTTGCACGGTTGAAAAATAGCATCAGGCTAATTGACAGGCCTCATGGGCAGCATTCGGTTGTTCTGGCTGAAGATGCTCCGAAGTTCAATGGAAAGGGAGATTATGGTAGATACATCAGTGCATCACGACAGATATACCTGACATTTCCAGCTGACAGCACTTTTAGCGAGGCTGATGTTTCAAACTACTTTAGCACTTTTGGGAAAGTTGAAGATGTAAGGATTCCAAGCCAAGAAAGAAGGATGTTTGGATTTGTGACATTTGATGATCCTGAAACTGTAAAAGCAATTTTGGATAAGGGAAATCCCCATTATGTCTGCGAATCAAGGGTTCTTGTGAAACCTTACAAAGAGAAGCCAAAACTTATGCTGAGAAAGCAATCAGACAGAATTGAGCACCAGCACCATGCTTATTACTCAGCACACTACGTAGATGTTGACACTGAACCTACGCCAATTCCAAGAGGTTGCAGTAACCCTCGATTACTCAGGAGCCTGATCATTGAACAGCAAGAGGAGGCTGCCTTTGAATTTCATAGAAGACGTTTTGCAGAGCTGCAGTTGGCCCAGAAATCTTTTACCACTTCACCCCATTTAGGCTTTAACACTGGCGTAGCAAAAGCTTCAAATGATCTTTTCAATGTCCATTCTGCAGAATCTCAGAATCATGTTGTGAATGACAAATCCGGATATATGGATAACAATTACACTGCTGAGGACAGCAATCAAGGACTGAATCTCCCAGACAGCCCATTTTCATTTCCAGTAGATAGTGGAATTTCAGCAGTAATTTAG 1770 0.426 MSGEALRYVEEKRVVERSVLEALSAMDISEYTGIILGKLQKFEPENASKILGYLLVQEHGEEEMAKLASLPDHLIGEVAFQTRTKLPRSAARSIIPPISPPMNCQPGFSQFSVISPTSVITADTPTTAPSFQLQSPFWDPQSVNNANAEYMAQGYLDSISELQKQTPFFTLENHMDAVNSRAVGTSGTPSISNDYYGLDALSVGNLGGKAGRRFDHPVKTCHYFNKGFCKHGNSCRYYHGLGPPDAFPHMYGNDSFNDDQMISPGSLAQLESEIVELLKLKKGGSISIASLPMAYFEKYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIDRPHGQHSVVLAEDAPKFNGKGDYGRYISASRQIYLTFPADSTFSEADVSNYFSTFGKVEDVRIPSQERRMFGFVTFDDPETVKAILDKGNPHYVCESRVLVKPYKEKPKLMLRKQSDRIEHQHHAYYSAHYVDVDTEPTPIPRGCSNPRLLRSLIIEQQEEAAFEFHRRRFAELQLAQKSFTTSPHLGFNTGVAKASNDLFNVHSAESQNHVVNDKSGYMDNNYTAEDSNQGLNLPDSPFSFPVDSGISAVI 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00452 589 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 26 581 - -
Vian6g00452 589 ProSiteProfiles Zinc finger C3H1-type profile. 215 242 IPR000571 GO:0046872
Vian6g00452 589 ProSiteProfiles OST-type HTH domain profile. 266 349 IPR025605 -
Vian6g00452 589 Gene3D - 213 276 - -
Vian6g00452 589 Gene3D - 372 446 IPR012677 -
Vian6g00452 589 Pfam OST-HTH/LOTUS domain 266 345 IPR025605 -
Vian6g00452 589 SMART rrm1_1 369 439 IPR000504 GO:0003723
Vian6g00452 589 SUPERFAMILY RNA-binding domain, RBD 379 461 IPR035979 GO:0003676
Vian6g00452 589 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 375 446 - -
Vian6g00452 589 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 220 240 IPR000571 GO:0046872
Vian6g00452 589 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 368 444 IPR000504 GO:0003723
Vian6g00452 589 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 380 427 IPR000504 GO:0003723
Vian6g00452 589 CDD RRM_AtC3H46_like 370 439 IPR034365 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00452 Vian-Chr6 18888946 18892170 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00452 - - var:108341215 1122.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00452 6 18888946 18892170 Vian6g00452 6 18888946 18892170 ECH
Vian6g00452 6 18888946 18892170 Vian7g01130 7 19516247 19519708 PCT