Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00593 ATGGAACGTGCTCGCAGGCTTGCGAACCGCGCCATTCTGAAGCGTCTGGTTTCAGAGGCAAAGCAGCACCAGAAGAATGAATCCTTACTGCACTCTTCCACCACCCCCATGTTGCTGTACTCTTCCTCTAGGTGCATGTCCTCTGTTTCCTCCGCTGCAGTGAGAAACAGAGGATTCAAAACAGAGACCCTTCTGGGAAGGAGCATGAACATCGCCACCATGTCACGCGGCGTTGTTGGTGGCCTCCTTGGTGTCGGTTCAACCCGATCCATCTCTGTTGAAGCGCTTCAACGGAGTGACACTTTCCCCAGGCGCCATAACTCTGCCACCCCAGAGGAACAGAGCAAGATGGCAGAGTCAATTGGCTTTGAGAGCCTCGATTCTCTGGTGGACGCCACCGTTCCTAAGTCGATCCGCTTGAAGGAGATGAAGTTCGGGAAATTCGATGGAGGTTTAACAGAGAGCCAGATGATTGAGCACATGAAGGATTTGGCCTCAAAGAACAAGGTTTTCAAGTCCTACATTGGGATGGGGTACTACAACACTCATGTTCCACCAGTAATCTTGAGGAACATAATGGAGAACCCTGCTTGGTACACTCAGTACACTCCTTACCAGGCTGAGATATCTCAGGGGAGGCTTGAGTCACTGCTGAATTACCAGACCATGATCACTGACCTCACTGGCTTGCCCATGTCCAATGCCTCATTGCTTGATGAGGGCACTGCTGCAGCTGAGGCAATGTCCATGTGCAATAACATCCAAAAGGGGAAGAAGAAGACCTTCATCATCGCAAGTAACTGCCACCCTCAGACCATTGATATTTGCAAGACAAGAGCTGCTGGATTTGATCTCAAGGTTGTGACAGCAGATCTTAAGGATATTGATTACAAATCTGGGGATGTGTGTGGTGTGCTTGTGCAGTACCCTGGGACTGAGGGTGAGGTGTTGGACTATGGGGAGTTCATCAAGAAGGCTCATGCTCATGAGGTGAAGGTTGTTATGGCAAGTGATCTGTTGGCACTGACTGTGTTGAAGCCTCCTGGGGAGTTGGGGGCAGATATTGTTGTTGGATCAGCTCAGAGGTTTGGAGTTCCAATGGGCTATGGAGGTCCTCATGCAGCTTTCTTGGCCACATCACAAGAGTACAAGAGGATGATGCCAGGGAGAATCATTGGAGTCAGTGTTGATTCTACAGGAAAGACTGCTCTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGGCTACCAGCAACATTTGCACTGCCCAGGCACTTCTTGCAAACATGGCTGCTATGTATGCTGTGTATCATGGACCTGAAGGCCTTAAGAACATTGCAAACCGTGTTCATGGTCTTGCTGGGGCATTTGCTCTTGGATTAAAGAAACTTGGAACTGTGGAAGTTCAAGACCTTCCTTTCTTTGACACTGTGAAGGTTAAGACTTCCAATGCACATGCAATTGCTGATGCAGCTATCAAAAGCGAAATAAATTTGCGAGTTGTAGATGGAAACACTATCACTGTTGCTTTTGATGAAACAACCACATTAGAGGATGTTGATAAGCTGTTCAAAGTCTTTGCTGGTGGAAAGCCAGTCCCCTTCACAGCTGCATCTATTGCATCAGAAGTTCAAAGTGCAATTCCTTCTGGATTAACTAGGAATAGCCCTTATCTGACACACCCTATCTTTAACACGTACCAAACTGAGCATGAGTTGCTTAGGTACATGTATAGGCTACAATCAAAAGATCTCTCACTATGCCACAGTATGATTCCATTGGGATCCTGTACAATGAAGCTGAATGCAACGACAGAAATGATGCCTGTGACATGGTCCAACTTTAGTGATATTCACCCTTTTGCACCAGTTAACCAGGCTGAAGGTTATCAGGAAATGTTCGACAATTTGGGTGACTTGTTGTGTACCATCACCGGGTTTGACTCCTTCTCCTTGCAACCAAATGCCGGTGCTGCTGGAGAATATGCTGGACTTATGGTTATCCGTGCATATCATCTGGCAAGAGGTGACCATCACCGCGATGTTTGCATTATACCTGTCTCAGCACATGGTACAAATCCTGCTAGCGCTGCAATGTGTGGAATGAAAATCGTCTCAGTTGGAACTGATGCCAAGGGAAACATTAATATAGAAGAGTTGAGAAAGGCTGCTGAAAAACACAAGGACAACTTATCTGCACTTATGGTAACATATCCTTCAACCCACGGTGTCTATGAGGAAGGTATTGATGAGATCTGCAAGATTATTCATGATAATGGTGGCCAAGTATACATGGATGGTGCCAACATGAATGCACAGGTGGGGCTCACAAGCCCGGGTTGGATAGGAGCAGACGTTTGTCATCTCAATCTCCACAAGACATTCTGCATCCCTCATGGAGGAGGTGGCCCTGGCATGGGTCCTATTGGTGTAAAGAAACACTTGGCACCATTTTTACCTTCCCACCCTGTGATATCAACTGGTGGAATTCCTGCCCCTGAAAATCCTCAACCACTTGGTACCATCTCTGCTGCACCATGGGGATCAGCACTCATATTGCCAATCTCTTACACTTACATCGCTATGATGGGTTCTAAAGGACTCACTGATGCATCAAAGATAGCCATTTTGAATGCAAACTACATGGCCAAACGATTGGAGAACTATTACCCAGTTCTTTTCCGCGGAGTCAATGGAACAGTTGCTCATGAGTTCATTATTGACTTGAGAGGCTTCAAGAATACTGCTGGAATTGAGCCTGAAGATGTTGCAAAACGCCTCATGGACTATGGTTTTCATGCACCAACAATGTCGTGGCCTGTGCCTGGCACACTCATGATTGAGCCTACAGAGAGTGAAAGCAAGGCCGAGTTGGACAGGTTCTGTGATACTCTTATTTCAATTAGAGAAGAAATTGCTGAAATAGAGAAAGGAAAGGCTGACATAAACAACAATGTGCTTAAGGGAGCTCCTCATCCACCATCATTGCTCATGGCTGATGCATGGACAAAACCTTACTCAAGGGAATATGCAGCCTTCCCAGCTCCATGGCTCCGTGCTTCAAAGTTCTGGCCTACCACAGTCCTCTTCCAATTTCTTCCTCTTCGAGCTATTCAGCAGATTGAGTTATCGCAGCCTATTTACGATTCATCGTCCTCTCATTCAACAACCACTCCTCAACACCGTTTGCTGCAGAATTTTTAA 3216 0.467 MERARRLANRAILKRLVSEAKQHQKNESLLHSSTTPMLLYSSSRCMSSVSSAAVRNRGFKTETLLGRSMNIATMSRGVVGGLLGVGSTRSISVEALQRSDTFPRRHNSATPEEQSKMAESIGFESLDSLVDATVPKSIRLKEMKFGKFDGGLTESQMIEHMKDLASKNKVFKSYIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMSMCNNIQKGKKKTFIIASNCHPQTIDICKTRAAGFDLKVVTADLKDIDYKSGDVCGVLVQYPGTEGEVLDYGEFIKKAHAHEVKVVMASDLLALTVLKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSTGKTALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKNIANRVHGLAGAFALGLKKLGTVEVQDLPFFDTVKVKTSNAHAIADAAIKSEINLRVVDGNTITVAFDETTTLEDVDKLFKVFAGGKPVPFTAASIASEVQSAIPSGLTRNSPYLTHPIFNTYQTEHELLRYMYRLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWSNFSDIHPFAPVNQAEGYQEMFDNLGDLLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHLARGDHHRDVCIIPVSAHGTNPASAAMCGMKIVSVGTDAKGNINIEELRKAAEKHKDNLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVISTGGIPAPENPQPLGTISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILNANYMAKRLENYYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDTLISIREEIAEIEKGKADINNNVLKGAPHPPSLLMADAWTKPYSREYAAFPAPWLRASKFWPTTVLFQFLPLRAIQQIELSQPIYDSSSSHSTTTPQHRLLQNF 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00593 1071 Gene3D - 614 840 IPR015421 GO:0003824
Vian7g00593 1071 Gene3D - 185 445 IPR015421 GO:0003824
Vian7g00593 1071 FunFam Glycine dehydrogenase (decarboxylating), mitochondrial 862 1000 - -
Vian7g00593 1071 FunFam Glycine cleavage system P protein 438 527 - -
Vian7g00593 1071 Coils Coil 721 741 - -
Vian7g00593 1071 SUPERFAMILY PLP-dependent transferases 570 983 IPR015424 -
Vian7g00593 1071 Gene3D Aspartate Aminotransferase, domain 1 174 527 IPR015422 GO:0003824
Vian7g00593 1071 MobiDBLite consensus disorder prediction 1052 1071 - -
Vian7g00593 1071 NCBIfam aminomethyl-transferring glycine dehydrogenase 105 1031 IPR003437 GO:0004375|GO:0006544
Vian7g00593 1071 SUPERFAMILY PLP-dependent transferases 105 532 IPR015424 -
Vian7g00593 1071 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 96 1052 IPR003437 GO:0004375|GO:0006544
Vian7g00593 1071 CDD GDC-P 574 969 IPR020581 GO:0004375|GO:0006546
Vian7g00593 1071 Gene3D Aspartate Aminotransferase, domain 1 861 1000 IPR015422 GO:0003824
Vian7g00593 1071 FunFam Glycine dehydrogenase (decarboxylating), mitochondrial 185 445 - -
Vian7g00593 1071 FunFam glycine dehydrogenase (Decarboxylating), mitochondrial 613 852 - -
Vian7g00593 1071 CDD GDC-P 154 531 IPR020581 GO:0004375|GO:0006546
Vian7g00593 1071 Pfam Glycine cleavage system P-protein 105 531 IPR020581 GO:0004375|GO:0006546
Vian7g00593 1071 Pfam Glycine cleavage system P-protein 544 824 IPR020581 GO:0004375|GO:0006546
Vian7g00593 1071 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 88 1031 IPR020581 GO:0004375|GO:0006546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00593 Vian-Chr7 13807744 13821165 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00593 K00281 - gmx:100777528 1937.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00593 7 13807744 13821165 Vian4g02135 4 38189449 38194530 PCT