LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian4g02135	ATGGAACGTGCAAGGAGGCTAGCAAATAGGGCAATTCTAAAGAGGCTGATTTCTTCCACGAAGGATCATTCCCATTCACGGTGTCTGTCGTATGTTTCTCATTCCTTTGCAAGAACCAAACAAGAAAACTTGATCGGAAACAACAGACACCATGCAAGCAATGTAACATCTCGATCCATTTCAGTGGAGGCACTCAAGCCCAGCGACACGCTCCCTCGACGTCACAACTCTGCCACATCAGATGAGCTAACCAAAATGGCCCAGACATGCGGCTTCGGCAATGTCAACTCCCTCATCGACGCCACCATTCCCAAATCCATCCGTCGGAAAGAAATGTCTTTCAACACCTTCGATGAGGGACTGACAGAGTCCGAAATGATGTCGGCTTTGAGAATGGCCTTGCAAACTAGGGAGCAGCATATTCGCAGGGACAAGGCCACCAGCAACATTTGCACTGCTCAGGCATTGCTTGCAAACATGGCTGCTATGTATGCTGTGTATCATGGACCTGAAGGACTTAAAACCATTGCCCAACGAGTTCATGGCCTTGCTGGGGTCTTTGCCCTGGGATTAAAGAAACTTGGTACCGTGGAAGTTCACGACCATCCCTTCTTTGACACTGTGAAAATTAAGACCACCGATGCTCAAGAAATTGCTGATGTTGCTCACAAAAATGAAATAAATTTGCGGGTTGTTGATGGGAACACAATCACTGTTGCCTTTGATGAAACAACAACCTTGGAGGATGTTGATAACCTTTTCAAAGTTTTTTCTAACGGCAAACATGTATCCTTCACAGCTACCTCCCTTGCACCAGAAGTTCAGATTGCAATTCCTTCAGGACTAATTAGGAAGAGTCCTTATCTAACACACCCTATCTTTAACATGTACCACACTGAGCATGAAATGCTCAGGTACATTCACAGGCTACAAGCGAAAGATCTTTCATTGTGCCATAGTATGATCCCATTGGGATCTTGTACAATGAAGTTGAATGCAACCACTGAAATGATGCCTGTGACATGGCCTAACTTTGCTAACATTCACCCTTTTGCACCAATCGAACAGGCTCAAGGTTATCAGGAAATGTTCAAAAATTTGGGTAGCTTGTTGTGTGCAATCACTGGGTTTGACTCCTTCTCCTTGCAACCTAATGCGGGTGCGGCTGGAGAATACGCTGGATTGATGGTTATTCGTGCATATCATTTGGCAAGAGGAGACCACCACCGCAATATTTGCATTATACCAGTGTCTGCACATGGTACGAATCCTGCCAGTGCTGCTATGTGTGGAATGAAAATTGTATCAATCGGAACCGATTCCAAGGGAAACATCAATATTGAAGAGTTGAGGAAGGCTGCTGAAACACACAAGAACAACTTATCTACACTTATGGTAACATATCCTTCAACTCACGGTGTTTACGAAGAAGGCATTGATGAGATATGCAAGATTATTCATGATAACAGAGGACAAGTATATATGGACGGTGCTAACATGAATGCACAGGTGGGACTTACAAGCCCAGGTTGGATTGGAGCAGATGTTTGCCATCTGAATCTCCACAAGACATTTTGCATCCCTCATGGAGGAGGTGGCCCTGGCATGGGTCCTATTGGAGTAAAGAAACACTTGGCACCATTTTTACCTTCACATCCAGTGGTTCCCACTGGTGGCATTCCTGCCCCTGACAAGAGACAACCAGTTGGTACCATTTCTGCAGCACCATGGGGCTCAGCTCTGATATTACCTATCTCATACTCTTACATAGCCATGATGGGTTCTAAAGGACTTACCGAAGCGTCAAAAACAGCAATTTTGAAGGCAAACTATATGGCAAAACGATTGGAGACTCATTACCCTGTTCTTTACCGTGGAACGAATGGAACTGTTGCTCATGAATTCATCATTGACTTAAGAGGCTTTAAGAACACTACTGGGATAGAACCTGAGGATGTTGCAAAGCGGCTTATAGACTATGGCTTCCATGGACCCACAATGTCATTTCCTGTGTCTGGCACACTTATGATTGAACCCACTGAAAGTGAAAGCAAGGCTGAGTTAGACAGGTTTTGTGATGCTCTTATTTCCATTCGGCAAGAAATTGCTGAGATTGAGAATGGAAAGGCTGACATCAACAACAATGTGCTGAAGGGTGCACCTCACCCACCATCACTGCTCATGGCAGATGCATGGACAAAACCTTACTCTCGAGAATATGCAGCCTTCCCAGCTTCCTGGCTTCGTTTTTCCAAGTTCTGGCCTTCCACTGGACGTATTGATAATGTGTACGGTGACCGGAACTTGGTTTGCACCCTTCCCCCAGAATCAAAGGTTGCTGAAGAACGTACCACAACAACGTAA	2364	0.4514	MERARRLANRAILKRLISSTKDHSHSRCLSYVSHSFARTKQENLIGNNRHHASNVTSRSISVEALKPSDTLPRRHNSATSDELTKMAQTCGFGNVNSLIDATIPKSIRRKEMSFNTFDEGLTESEMMSALRMALQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFALGLKKLGTVEVHDHPFFDTVKIKTTDAQEIADVAHKNEINLRVVDGNTITVAFDETTTLEDVDNLFKVFSNGKHVSFTATSLAPEVQIAIPSGLIRKSPYLTHPIFNMYHTEHEMLRYIHRLQAKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPNFANIHPFAPIEQAQGYQEMFKNLGSLLCAITGFDSFSLQPNAGAAGEYAGLMVIRAYHLARGDHHRNICIIPVSAHGTNPASAAMCGMKIVSIGTDSKGNINIEELRKAAETHKNNLSTLMVTYPSTHGVYEEGIDEICKIIHDNRGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPAPDKRQPVGTISAAPWGSALILPISYSYIAMMGSKGLTEASKTAILKANYMAKRLETHYPVLYRGTNGTVAHEFIIDLRGFKNTTGIEPEDVAKRLIDYGFHGPTMSFPVSGTLMIEPTESESKAELDRFCDALISIRQEIAEIENGKADINNNVLKGAPHPPSLLMADAWTKPYSREYAAFPASWLRFSKFWPSTGRIDNVYGDRNLVCTLPPESKVAEERTTTT	787

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian4g02135	787	Coils	Coil	447	467	-	-
	Vian4g02135	787	SUPERFAMILY	PLP-dependent transferases	128	256	IPR015424	-
	Vian4g02135	787	Pfam	Glycine cleavage system P-protein	126	257	IPR020581	GO:0004375\|GO:0006546
	Vian4g02135	787	Pfam	Glycine cleavage system P-protein	277	550	IPR020581	GO:0004375\|GO:0006546
	Vian4g02135	787	FunFam	Glycine dehydrogenase (decarboxylating), mitochondrial	588	726	-	-
	Vian4g02135	787	Gene3D	-	116	171	IPR015421	GO:0003824
	Vian4g02135	787	Gene3D	-	339	590	IPR015421	GO:0003824
	Vian4g02135	787	FunFam	glycine dehydrogenase (Decarboxylating), mitochondrial	339	578	-	-
	Vian4g02135	787	NCBIfam	aminomethyl-transferring glycine dehydrogenase	128	772	IPR003437	GO:0004375\|GO:0006544
	Vian4g02135	787	Gene3D	Aspartate Aminotransferase, domain 1	591	726	IPR015422	GO:0003824
	Vian4g02135	787	CDD	GDC-P	300	695	IPR020581	GO:0004375\|GO:0006546
	Vian4g02135	787	FunFam	Glycine cleavage system P protein	164	253	-	-
	Vian4g02135	787	SUPERFAMILY	PLP-dependent transferases	296	775	IPR015424	-
	Vian4g02135	787	PANTHER	GLYCINE DEHYDROGENASE, DECARBOXYLATING	53	128	IPR020581	GO:0004375\|GO:0006546

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian4g02135	Vian-Chr4	38189449	38194530	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian4g02135	K00281		-	gmx:100795673	1234.17

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian4g02135	4	38189449	38194530	Vian4g02135	4	38189449	38194530	ECH
	Vian7g00593	7	13807744	13821165	Vian4g02135	4	38189449	38194530	PCT