Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00514 ATGGACGAAGATCAAATAGAAGGTTGTGTGAGTGGGTATCTAAAGCAGAAAGGGTTTGCGCAAAACGATGACCAACTTCAACTTTCCAAAGCCGATTCCTCTCTTCAACCCGACACTCTCAATCGCTCTCAATTGGAGAGAGGTTCTGCTAGATACCACAACGGGTATGGCAGACTGAGATCATGGGCATATAGGTCACTTGAATCATACAAGCATGAATTACTGCGTGTGCTTTATCCAGTATTCGTCCATTGCTTCATGGATCTTGTGGCAAAAGGGCATCTTCAGGAAGCTTGGAACTTTTTCAATACCTTTCGTGAGGACCATGAAATGTTGCACTCACGAGACCTTCAGAAATTGGAACTAGTTCTTTCTCCTACTCATTTGGAGGAAATGGAATTCGCTCATTCCCTTAGGCAGAGTAAGTTCAACATAAAGATATGTCGGTATTCCTATGAGCTTCTATTGCAACATCTACATAGTATGCAATCCACCACAATAATTGGTATTATCAATGAGCATATTAGCTTCCAAGTTACAGCTGGGCAACCGAGCTCAATTTCTGATGATCCAGAAGCTGTTACCCTCAGTGGAAGCATCCATGATGCAGTAAACCAGATAAATCAGAAAGAAATCCTTTGGGGGATGTTTGAAGATTCTGTGGAAGACCACATAGATAAGGCTGGGGCCTTGCTTTCAGGCACAGAAAAGGGTGAAGGCGAAGGCAAAGAGGGAGACAATGATGAGAGTAAGAAAAGGTCAATTGATGTAGGAAAGCAAGGTAATTCAGTAAAAAAGGTAAAAAAGGACAAGGTCAGCAGTGCAACAGGGAAAAATGCTAAGCCAGAAGCTAACACTATATCTGCAGCACCTCGCATTAAACCAGAGATACCCTTGCCCACAGTTTCAACTGATGTAGAACTGTCTATCCTAGACGATTTAAGGAATCGTGTACAATTGAGTAGTGTTGCTCTCCCTTCAGTGAACTTCTACACATTTGTAAATACACATAATGGTTTAAGCTGTTCATCAATATCCCACGATGGGTCATTGATTGTTGGAGGATTTTCTGACTCTTCCCTAAAGGTCTGGGATATGGCAAAACTTGAGCAACAATCCACTGCTCGTAATTCAGTTTTTCTATCATCAGATTTTTCGCAGGGAGGGAATGACATGTCACAGAATGAACAAATTATTGGGCAAAATAGTGGGAGAAGACAGTATACATTGTATCAAGGTCACTCAGGTCCAGTCTATGCCGCCACTTTTAGTGCTGCCGGGGATTTTCTTCTTTCCTCTTCAGCAGACAAAACAGTTCGACTATGGAGTACAAAGCTTAATGCCAATCTTGTTTGTTACAAGGGTCACAATTACCCTATCTGGGATGTTCAGTTTAGTCCTGCAGGGCATTATTTTGCCAGCTGTTCACATGACAGAACTGCCAGGATTTGGTCTATGGACAGAACAAAACCTTTAAGAATAATGGCAGGACATTTGTCCGACGTTGATTGTGTGCAGTGGCATCCCAACTGCAACTACATTGCTACTGGCTCCAGTGATAAAACAGTTCGACTGTGGGATGTGCAGAGCGGGGAATGTGTTCGGGTTTTCATTGGTCATAGAAGTATGATTTTGTCTTTGGCAATGTCCCCTGATGGTCGCTACATGGCATCTGGTGATGAAGATGGCACAATCATGATGTGGGACCTCTCTAGTGGCTGTTGTGTCACACCTCTTGTCAGTCACACTTCATGTGTCTGGTCACTCGCTTTCAGTTGTGAAGGTTCTCTTCTAGCATCTGGATCTGCTGATTGCACAGTCAAATTTTGGGATGTAACTACGGGTATAAAGGTTCCAAGGAATGAAGAAAAAAGTGGAAATGCTAACAGACTCAGATCATTAAAAAGCCTGCCAACCAAATCTGCTTCAGTTTACTCTCTCCAGTTTTCTCGCAGGAATCTTCTTTTTGCAGCTGGAGCTGTTGCAAAAAGTGGTTGTTAG 2001 0.4283 MDEDQIEGCVSGYLKQKGFAQNDDQLQLSKADSSLQPDTLNRSQLERGSARYHNGYGRLRSWAYRSLESYKHELLRVLYPVFVHCFMDLVAKGHLQEAWNFFNTFREDHEMLHSRDLQKLELVLSPTHLEEMEFAHSLRQSKFNIKICRYSYELLLQHLHSMQSTTIIGIINEHISFQVTAGQPSSISDDPEAVTLSGSIHDAVNQINQKEILWGMFEDSVEDHIDKAGALLSGTEKGEGEGKEGDNDESKKRSIDVGKQGNSVKKVKKDKVSSATGKNAKPEANTISAAPRIKPEIPLPTVSTDVELSILDDLRNRVQLSSVALPSVNFYTFVNTHNGLSCSSISHDGSLIVGGFSDSSLKVWDMAKLEQQSTARNSVFLSSDFSQGGNDMSQNEQIIGQNSGRRQYTLYQGHSGPVYAATFSAAGDFLLSSSADKTVRLWSTKLNANLVCYKGHNYPIWDVQFSPAGHYFASCSHDRTARIWSMDRTKPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQSGECVRVFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGCCVTPLVSHTSCVWSLAFSCEGSLLASGSADCTVKFWDVTTGIKVPRNEEKSGNANRLRSLKSLPTKSASVYSLQFSRRNLLFAAGAVAKSGC 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00514 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 453 487 - -
Vian7g00514 666 Gene3D - 241 492 IPR015943 GO:0005515
Vian7g00514 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 537 578 IPR001680 GO:0005515
Vian7g00514 666 ProSitePatterns Trp-Asp (WD) repeats signature. 352 366 IPR019775 -
Vian7g00514 666 Pfam WD domain, G-beta repeat 490 527 IPR001680 GO:0005515
Vian7g00514 666 Pfam WD domain, G-beta repeat 573 611 IPR001680 GO:0005515
Vian7g00514 666 Pfam WD domain, G-beta repeat 450 485 IPR001680 GO:0005515
Vian7g00514 666 Pfam WD domain, G-beta repeat 531 569 IPR001680 GO:0005515
Vian7g00514 666 Pfam WD domain, G-beta repeat 335 365 IPR001680 GO:0005515
Vian7g00514 666 Pfam WD domain, G-beta repeat 408 443 IPR001680 GO:0005515
Vian7g00514 666 Gene3D - 577 664 IPR015943 GO:0005515
Vian7g00514 666 CDD TAF5_NTD2 52 181 IPR007582 -
Vian7g00514 666 PRINTS G protein beta WD-40 repeat signature 514 528 IPR020472 -
Vian7g00514 666 PRINTS G protein beta WD-40 repeat signature 598 612 IPR020472 -
Vian7g00514 666 PRINTS G protein beta WD-40 repeat signature 430 444 IPR020472 -
Vian7g00514 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 495 536 IPR001680 GO:0005515
Vian7g00514 666 ProSitePatterns Trp-Asp (WD) repeats signature. 556 570 IPR019775 -
Vian7g00514 666 MobiDBLite consensus disorder prediction 237 276 - -
Vian7g00514 666 MobiDBLite consensus disorder prediction 230 292 - -
Vian7g00514 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 579 615 - -
Vian7g00514 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 495 532 - -
Vian7g00514 666 ProSitePatterns Trp-Asp (WD) repeats signature. 514 528 IPR019775 -
Vian7g00514 666 SUPERFAMILY Taf5 N-terminal domain-like 44 179 IPR037264 -
Vian7g00514 666 Gene3D TFIID subunit TAF5, NTD2 domain 30 180 IPR037264 -
Vian7g00514 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 537 573 - -
Vian7g00514 666 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 2 660 - -
Vian7g00514 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 453 494 IPR001680 GO:0005515
Vian7g00514 666 ProSitePatterns Trp-Asp (WD) repeats signature. 598 612 IPR019775 -
Vian7g00514 666 SMART WD40_4 488 527 IPR001680 GO:0005515
Vian7g00514 666 SMART WD40_4 572 611 IPR001680 GO:0005515
Vian7g00514 666 SMART WD40_4 326 365 IPR001680 GO:0005515
Vian7g00514 666 SMART WD40_4 403 443 IPR001680 GO:0005515
Vian7g00514 666 SMART WD40_4 530 569 IPR001680 GO:0005515
Vian7g00514 666 SMART WD40_4 446 485 IPR001680 GO:0005515
Vian7g00514 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 374 IPR001680 GO:0005515
Vian7g00514 666 Gene3D - 493 576 IPR015943 GO:0005515
Vian7g00514 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 411 443 IPR001680 GO:0005515
Vian7g00514 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 411 443 - -
Vian7g00514 666 Pfam WD40 associated region in TFIID subunit, NTD2 domain 48 175 IPR007582 -
Vian7g00514 666 CDD WD40 338 660 - -
Vian7g00514 666 SUPERFAMILY WD40 repeat-like 326 660 IPR036322 GO:0005515
Vian7g00514 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 579 620 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00514 Vian-Chr7 12614968 12625545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00514 478 664 Miscellaneous Gene Families AT5G08390 27.807 1.89e-21 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00514 K03130 - gmx:100790500 1182.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00514 7 12614968 12625545 Vian4g02034 4 37041366 37049816 PCT