Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02034 ATGGAGGACGATAAAATAGTTGGATATGTTACCGCGTATCTGAAGAAGAGAGGTTTCACGCAAACCGAGAAGATTTTCCAGGAAGAGTTTCGGCATAACAAAACCACCAATTCCTCCTCCAGTAATTCCCTTCTCGAACCCGACATTGCCAACCACCTCCTCGCATTCTCTCAATTGGAGAGTGGTCCGGCTAGGTTCCACGACGGCTACAGCAAACTGCGAACATGGACTTATTCTTCACTGGATTTGTACAAGCACGAGTTGCTTCGCGTGCTTTATCCCGTGTTTATCCACTGCTTTATGGACCTCGTGGCGAAAGGACATGTTCAGGAAGCTCGGAATTTCTTCAATACTTTCCGTGAAGACCACGAAATGATGCACTTGCGTGACCTTCAGAAGTTAGAAGGGGTTCTTTCTCCTACCCATCTGGAGGAAATGGAATTCGCTCACTCGCTTAGACAGAGCAAATTCAACATAAAGATATGTGAGTGGGCATTTATGTATTCCTATGAGCTTCTCTTGCAACATCTACACAGTACTCAATCCACCACTATACTCGTTTCCCCTGGACAACCTAGCTTAATTTCTGATGATCCGGAAGCTGTTACCCTTACTGGAAGCAGCCAGGAAGCAGCAAACCGGATAAATCAAAAAGAAATTCATTGGGGGTTACTTGAAGATTCTCTTGAAGAACGGCTAGAGAAGGCAGGGGCTTTGCTTTCAGACTCGGAAAAGGGTGAAGGGGAAACAAAAGAAGGGGAGAATGACGAGACTAAGAAAAGATCCATTGAAGGAGGAAAGCAAGGTGGTTCAGTAAAAAAAGTAAAAAAGGACAAGGGTGGTAGCACAACTGGAAAGAGTGCAAAACCTGAAGCTAGTGCTGTACCTGCAGCTCCTCGAGTTAAGCCTGAACTCCCCTTACCCTTAATGTTTAATGCTTGTTTTGGATCAGACAGGAAGAAAGTTCAACCTGATAAAAAGGATATGGAGTGGGAGGATAAGAAACCCTGCAAAAGAGAAACACTAAATACAACCATAAACATGGAGGAGTTAAGAATTCAGCTAGGTTTCCGAGTTTCTCTGGAATGCAAGCCTTCCCACTATTCTGATCCTTTATTCTGTGGAAATTTGGTCGAAAGAAATAGAGAATGGAGATCAGGAGGGGAATCCTCTACTTTAAATGGGAGTTCCAAGTCTAAGACTTCGTTGATTTGGGACTCCTCTATGCTGCATCAATCCTGTTTAAATGGAAAGAGTGGTCATGTACTATGTGCAGATGCACTTCAATGGCCAACTGAGGTTGAACAGTCCATCCTTGAAGATTTAAGGAACCGTGTACAGCTCAGCAATGTTGCATTGCCGTCAGTTAGCTTTTACACATTTATAAATACACATAACAGGTTTGGGATATGGCAAAGCTTGGACAACCGACTGCCAGTTGATGAGAATGACACATCACCAAATGATCAAATGTTTGGGCAAGGGCTTGGGAAAAGACAGTATACACTATTTCAAGGTCATTCAGGACCTGTTTATGCAGCCTCTTTTAGTCCCGTGGGAGATTTTATCCTTTCATCCTCAGCAGACGCAACAATTCGGTTATGGAGCACCAAACTTAATGCCAATCTTGTTTGTTATAAGGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTAGGGCATTATTTTGCCAGCTCTTCACACGACAGAACTGCTAGGATTTGGTCAATGGACAGGATACAGCCCTTAAGAATAATGGCAGGACACTTATCTGATGTTGATTGTGTACAATGGCATGCCAACTGCAACTACATTGCAACTGGTTCCAGTGACAAAACAGTTCGACTATGGGATGTGCAGAGCGGTGAGTGTGTCCGGGTTTTTGTTGGTCACAGGGGTATGATTTTGTCTTTGGCAATGTCTCCTGATGGTCGCTATATGGCATCTGGGGATGAAGATGGCACGATCATGATGTGGGACCTCTCTAGTGGTCGCTGTCTCACCCCTTTGATCGGGCACACGTCTTGTGTCTGGTCCCTTGCATTCAGTTCTGAAGGTTCAATTCTAGCATCTGGATCTGCTGATTCCACTGTAAAATTGTGGGATGTAAATACGAGCACCAAGGTTTCAAGGGCTGAAGAAAAAAGTGGGAATGCTAACAGACTTAGATCGCTGAAAACTCTGGCAACCAAATCAACCCCAGTTTACTCATTGCGGTTTTCTCGAAGGAATCTTCTTTTTGCGGCTGGAGCTCTAGCAAAAAGTGGGTAA 2277 0.4427 MEDDKIVGYVTAYLKKRGFTQTEKIFQEEFRHNKTTNSSSSNSLLEPDIANHLLAFSQLESGPARFHDGYSKLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTFREDHEMMHLRDLQKLEGVLSPTHLEEMEFAHSLRQSKFNIKICEWAFMYSYELLLQHLHSTQSTTILVSPGQPSLISDDPEAVTLTGSSQEAANRINQKEIHWGLLEDSLEERLEKAGALLSDSEKGEGETKEGENDETKKRSIEGGKQGGSVKKVKKDKGGSTTGKSAKPEASAVPAAPRVKPELPLPLMFNACFGSDRKKVQPDKKDMEWEDKKPCKRETLNTTINMEELRIQLGFRVSLECKPSHYSDPLFCGNLVERNREWRSGGESSTLNGSSKSKTSLIWDSSMLHQSCLNGKSGHVLCADALQWPTEVEQSILEDLRNRVQLSNVALPSVSFYTFINTHNRFGIWQSLDNRLPVDENDTSPNDQMFGQGLGKRQYTLFQGHSGPVYAASFSPVGDFILSSSADATIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRGMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSILASGSADSTVKLWDVNTSTKVSRAEEKSGNANRLRSLKTLATKSTPVYSLRFSRRNLLFAAGALAKSG 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02034 758 Gene3D - 583 664 IPR015943 GO:0005515
Vian4g02034 758 Gene3D - 665 757 IPR015943 GO:0005515
Vian4g02034 758 Pfam WD domain, G-beta repeat 501 536 IPR001680 GO:0005515
Vian4g02034 758 Pfam WD domain, G-beta repeat 583 620 IPR001680 GO:0005515
Vian4g02034 758 Pfam WD domain, G-beta repeat 666 704 IPR001680 GO:0005515
Vian4g02034 758 Pfam WD domain, G-beta repeat 543 578 IPR001680 GO:0005515
Vian4g02034 758 Pfam WD domain, G-beta repeat 624 662 IPR001680 GO:0005515
Vian4g02034 758 CDD TAF5_NTD2 63 186 IPR007582 -
Vian4g02034 758 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 630 667 - -
Vian4g02034 758 ProSiteProfiles Trp-Asp (WD) repeats profile. 672 713 IPR001680 GO:0005515
Vian4g02034 758 PRINTS G protein beta WD-40 repeat signature 523 537 IPR020472 -
Vian4g02034 758 PRINTS G protein beta WD-40 repeat signature 607 621 IPR020472 -
Vian4g02034 758 PRINTS G protein beta WD-40 repeat signature 691 705 IPR020472 -
Vian4g02034 758 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 588 625 - -
Vian4g02034 758 ProSiteProfiles Trp-Asp (WD) repeats profile. 630 671 IPR001680 GO:0005515
Vian4g02034 758 Pfam WD40 associated region in TFIID subunit, NTD2 domain 61 183 IPR007582 -
Vian4g02034 758 MobiDBLite consensus disorder prediction 238 300 - -
Vian4g02034 758 SMART WD40_4 497 536 IPR001680 GO:0005515
Vian4g02034 758 SMART WD40_4 539 578 IPR001680 GO:0005515
Vian4g02034 758 SMART WD40_4 665 704 IPR001680 GO:0005515
Vian4g02034 758 SMART WD40_4 581 620 IPR001680 GO:0005515
Vian4g02034 758 SMART WD40_4 623 662 IPR001680 GO:0005515
Vian4g02034 758 SUPERFAMILY WD40 repeat-like 498 753 IPR036322 GO:0005515
Vian4g02034 758 SUPERFAMILY Taf5 N-terminal domain-like 51 186 IPR037264 -
Vian4g02034 758 MobiDBLite consensus disorder prediction 238 284 - -
Vian4g02034 758 CDD WD40 504 753 - -
Vian4g02034 758 ProSiteProfiles Trp-Asp (WD) repeats profile. 504 536 IPR001680 GO:0005515
Vian4g02034 758 Gene3D - 495 582 IPR015943 GO:0005515
Vian4g02034 758 Gene3D TFIID subunit TAF5, NTD2 domain 45 188 IPR037264 -
Vian4g02034 758 ProSitePatterns Trp-Asp (WD) repeats signature. 607 621 IPR019775 -
Vian4g02034 758 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 504 536 - -
Vian4g02034 758 ProSiteProfiles Trp-Asp (WD) repeats profile. 588 629 IPR001680 GO:0005515
Vian4g02034 758 ProSitePatterns Trp-Asp (WD) repeats signature. 649 663 IPR019775 -
Vian4g02034 758 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 2 753 - -
Vian4g02034 758 FunFam Transcription initiation factor TFIID subunit 5 582 751 - -
Vian4g02034 758 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 546 580 - -
Vian4g02034 758 ProSiteProfiles Trp-Asp (WD) repeats profile. 546 587 IPR001680 GO:0005515
Vian4g02034 758 ProSitePatterns Trp-Asp (WD) repeats signature. 691 705 IPR019775 -
Vian4g02034 758 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 672 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02034 Vian-Chr4 37041366 37049816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02034 498 707 Miscellaneous Gene Families AT5G08390 32.243 9.56e-29 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02034 K03130 - oeu:111400326 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00514 7 12614968 12625545 Vian4g02034 4 37041366 37049816 PCT