Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian7g00423 | ATGTCTAAAGTTCTCGGCTTTTCCGGAGGTGATGACTTTTGCTCTGGGGGATCAATCTACGCCAACCCAAAGGAAGCGAGTTTCTTCCTTCCCCTTGGCCCTCAAGTTGATGTATACTTTCCTCCCAGGAAGAGATCGCGCGTCAACGCTCCATTCGTTTTCGATGGAGAATGGTTTGAGCAAAAGCAGAAAACCTCTATTGAAGCCTTACCAGATGAGTGTCTCTTTGAGATCTTCAGAAGGTTGCCCGCTGGCGAGGACAGGAGTGCATGTGCTTGCGTTTCCAAGCGCTGGCTTATGCTTCTGAGCAGTATTTGCAAAGATGAAATCTGTGCCATGAAAAACACCAGCGCAGAAAACATTGAAAAGGATGGTTATGATGTAGAATTTGGAGGTGAGGGATACCTCTCTCGGAGCTTGGAAGGAAAGAAGGCCACGGATGTTAGACTGGCTGCCATAGCTGTTGGAACTGCATCTCGCGGAGGGTTGGGGAAGCTTTCCATCCGAGGAAGCAACATGTGTCGTGGGGTTACTAGTCTTGGTCTCAGGGCAGTTGCTCATGGATGCCCTTCTTTGAAGTCTTTTTCTCTATGGAATGTTTCTACTGTTGGTGACGAGGGCCTAATCGAGATCGCTAACGGTTGTCACCAGCTAGAAAAGCTCGACCTTTGCAAGTGCCCTGCTGTTACTGATAAGGCTTTGGCTGCAATTGCAAAGAACTGCCAGAATCTGACCGAGCTTTCGTTGGAATCGTGCCCTAATGTTGGTAATGAAGGTCTGCGAGCTATTGGGAAGTTCTGCCCCAACCTAAGATCCGTAACCATCAAGGACTGCACAGGTGTTAGCGATCAGGGAATTGCTGGATTGTTTTCAACTTCTTTGGTTCTGACGAAGGTGAAGCTCCAAGCACTGTCTGTGTCAGATCTCTCTCTAGCCGTTATTGGACATTATGGGAAGTCTGTTACTGATCTTGTCCTTAATTGCCTCCCAAATGTCAGCGAGAAGGGGTTCTGGGTAATGGGAAATGGTAGTGGGTTGAAGAAGCTGAAGTCACTCACAGTTGCATCATGCAGGGGAGTAACCGACATTGGACTTGAAGCTGTAGGAAAGGGTTGCCCAAATCTGAAAATTGCACACCTTCACAAGTGTGCCTTTTTGTCAGACAATGGGTTGATATCGTTTGCCAAGGCTGCTTCATCACTCGAGAGCCTTCGATTGGAAGAGTGCCACAGAATCACCCAATTTGGGTTTTTTGGTGTCCTTTTTAACTGTGGTGCAAAATTGAAGTCCATCTCTTTGGTGAGGTGCTACGGAATCAAAGACCTGAATTTGGTGTTGCCGACCATTTCTCCTTGTGAATCCCTTAGATCATTGACCATCTGCAACTGCCCTGGATTTGGCAACGCCTCACTCTCTGTACTGGGAAAGCTGTGCCCTAAGCTTCAGCATGTTGAACTAAGTGGACTCGATGGAGTGACTGATGCCGGGGTTCTTCCACTGCTAGAGAGTTCTGAGGCTGGTTTGGTTAAAGTGAACCTCAGTGGCTGCACAAATGTCACAGACAAAGTAGTTTCATCCTTGGCCAACCTTCATGGTTGGACTCTTGAGAACCTAAACCTTGATGGTTGTAGAAACATCAGTGATGCTAGCTTGATGGCAATTGCTGAAAACTGTGCATTGCTATGCGATCTTGATGTCTCCAAGTGCTCAATCACAGATGCTGGGATAGCAGCCCTGGCACATGCCCAACAGATTAATCTGCAAATTCTCTCTTTGTCAGGTTGCGCTTTGGTCTCAGACAGGAGCTTGCCCGCCTTGAGAAAATTGGGCCGGACCCTTTTGGGACTGAACATCCAGCACTGCAATGCAATTAACAGTGGCACCGTTGACATGCTTGTAGAGCTTCTCTGGAGGTGTGACATCCTCTCGTAA | 1932 | 0.4783 | MSKVLGFSGGDDFCSGGSIYANPKEASFFLPLGPQVDVYFPPRKRSRVNAPFVFDGEWFEQKQKTSIEALPDECLFEIFRRLPAGEDRSACACVSKRWLMLLSSICKDEICAMKNTSAENIEKDGYDVEFGGEGYLSRSLEGKKATDVRLAAIAVGTASRGGLGKLSIRGSNMCRGVTSLGLRAVAHGCPSLKSFSLWNVSTVGDEGLIEIANGCHQLEKLDLCKCPAVTDKALAAIAKNCQNLTELSLESCPNVGNEGLRAIGKFCPNLRSVTIKDCTGVSDQGIAGLFSTSLVLTKVKLQALSVSDLSLAVIGHYGKSVTDLVLNCLPNVSEKGFWVMGNGSGLKKLKSLTVASCRGVTDIGLEAVGKGCPNLKIAHLHKCAFLSDNGLISFAKAASSLESLRLEECHRITQFGFFGVLFNCGAKLKSISLVRCYGIKDLNLVLPTISPCESLRSLTICNCPGFGNASLSVLGKLCPKLQHVELSGLDGVTDAGVLPLLESSEAGLVKVNLSGCTNVTDKVVSSLANLHGWTLENLNLDGCRNISDASLMAIAENCALLCDLDVSKCSITDAGIAALAHAQQINLQILSLSGCALVSDRSLPALRKLGRTLLGLNIQHCNAINSGTVDMLVELLWRCDILS | 643 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian7g00423 | 643 | FunFam | EIN3-binding F-box protein 1 | 446 | 643 | - | - | |
| Vian7g00423 | 643 | Gene3D | Ribonuclease Inhibitor | 566 | 639 | IPR032675 | - | |
| Vian7g00423 | 643 | Gene3D | Ribonuclease Inhibitor | 505 | 565 | IPR032675 | - | |
| Vian7g00423 | 643 | Gene3D | Ribonuclease Inhibitor | 447 | 504 | IPR032675 | - | |
| Vian7g00423 | 643 | FunFam | EIN3-binding F-box protein 1 | 254 | 443 | - | - | |
| Vian7g00423 | 643 | CDD | F-box_AtTIR1-like | 67 | 104 | - | - | |
| Vian7g00423 | 643 | PANTHER | UNCHARACTERIZED | 534 | 626 | - | - | |
| Vian7g00423 | 643 | Gene3D | - | 60 | 110 | - | - | |
| Vian7g00423 | 643 | SUPERFAMILY | F-box domain | 63 | 104 | IPR036047 | GO:0005515 | |
| Vian7g00423 | 643 | SMART | LRR_CC_2 | 241 | 266 | IPR006553 | - | |
| Vian7g00423 | 643 | SMART | LRR_CC_2 | 372 | 397 | IPR006553 | - | |
| Vian7g00423 | 643 | SMART | LRR_CC_2 | 505 | 530 | IPR006553 | - | |
| Vian7g00423 | 643 | SMART | LRR_CC_2 | 346 | 371 | IPR006553 | - | |
| Vian7g00423 | 643 | SMART | LRR_CC_2 | 398 | 423 | IPR006553 | - | |
| Vian7g00423 | 643 | SMART | LRR_CC_2 | 478 | 503 | IPR006553 | - | |
| Vian7g00423 | 643 | SMART | LRR_CC_2 | 215 | 240 | IPR006553 | - | |
| Vian7g00423 | 643 | SMART | LRR_CC_2 | 452 | 477 | IPR006553 | - | |
| Vian7g00423 | 643 | SMART | LRR_CC_2 | 532 | 557 | IPR006553 | - | |
| Vian7g00423 | 643 | SMART | LRR_CC_2 | 267 | 292 | IPR006553 | - | |
| Vian7g00423 | 643 | SMART | LRR_CC_2 | 584 | 609 | IPR006553 | - | |
| Vian7g00423 | 643 | SMART | LRR_CC_2 | 189 | 214 | IPR006553 | - | |
| Vian7g00423 | 643 | SMART | LRR_CC_2 | 558 | 582 | IPR006553 | - | |
| Vian7g00423 | 643 | FunFam | EIN3-binding F-box protein 1 | 135 | 253 | - | - | |
| Vian7g00423 | 643 | Pfam | F-box domain | 70 | 107 | IPR001810 | GO:0005515 | |
| Vian7g00423 | 643 | SUPERFAMILY | RNI-like | 211 | 641 | - | - | |
| Vian7g00423 | 643 | SMART | fbox_2 | 70 | 111 | IPR001810 | GO:0005515 | |
| Vian7g00423 | 643 | Gene3D | Ribonuclease Inhibitor | 255 | 446 | IPR032675 | - | |
| Vian7g00423 | 643 | Gene3D | Ribonuclease Inhibitor | 136 | 254 | IPR032675 | - | |
| Vian7g00423 | 643 | FunFam | EIN3-binding F-box protein 1 | 60 | 109 | - | - | |
| Vian7g00423 | 643 | Pfam | Leucine Rich repeat | 478 | 500 | IPR001611 | GO:0005515 | |
| Vian7g00423 | 643 | Pfam | Leucine Rich repeat | 240 | 263 | IPR001611 | GO:0005515 | |
| Vian7g00423 | 643 | Pfam | Leucine Rich repeat | 564 | 580 | IPR001611 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian7g00423 | Vian-Chr7 | 11060047 | 11062588 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian7g00423 | K14515 | - | gmx:100820247 | 1162.13 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vian7g00423 | 7 | 11060047 | 11062588 | Vian7g00423 | 7 | 11060047 | 11062588 | ECH | |
| Vian7g00423 | 7 | 11060047 | 11062588 | Vian4g01971 | 4 | 36365729 | 36368314 | PCT |