Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01971 ATGTCTCAAGTCTTCAGCTTTTCAGGAAATGATGATTTTTACCCTGGGGGTTGCATGTATCCTAACCCCAAGGAACCATGTCTCTTCTTGTCTCTTGGCCGTTCTGTTGATTACTTTCCTCTTCAGAAGAGATCTCGCGTCAGTTTTCCCTTTGATATCAATCGAGAATGGTTTGATGAGCCGAAGCAGAAGGCATCTATTGAATCTCTGCCAGATGAGTGCCTCTTCGAGATCCTTAGAAGGTTGCCTGTTGGCCAAGATAGGAGCGTCTGTGCTTCTGTATCCAAGCGCTGGCTTATGCTTCTAAGCAGTATTTGTGAGAATGAAATCTGCAACAATGGAAGTACCCTAGATGATAATTTGGTTGGTGATGATGATGATGAGGGATTTAGCAACGAAGGATATCTATCCCGAAGCTTGGAGGGAAAGAAGGCAACAGATGTTAGACTTGCTGCCATTGCTGTTGGAACAGCCTCTCGAGGAGGGCTGGGGAAGCTTACAATTCGTGGATGCAATTCAGATCGCGGGGTGACTAATGTAGGTCTCAAGGCCATTGCTCATGGATGCCCTTCTCTGAAGGTTTTCTCTGTCTTTGATGTTGCTACTATTGATGATGAAGGCCTAATTGAGATTGCTAGCGGGTGTCATAAGTTAGAGAAACTTGACCTTTGCAAATGTCCCAATATTTCTGACAAATCTTTAATCGCTATCTCAAAGAAGTGTCCAAATCTGGCTGAGTTATCAATTGAGTCATGTCCCAACATTGGTAACGAAGGTCTACAAGCTATTGGGAAGTTGTGTTCCAATCTAAGGTCTGTATCAATCAAGGGATGCTCAGGAGTTGGCGACCAGGGAGTTTGTGGCCTCATGTCTTCAGCTTCTTATGTTCTATCAAAGGTGAAGCTTGAGTCGTTGATGGTGTCTGATCTCTCTCTAGCAACGATTGGGCATTATGGCTTTCAAGTTACCAATCTTGTCCTAAGTGGCCTGCCAAATGTCAGTGAGAAAGGATTCTGGGTTATGGGTAATGGCCGTGGACTGCAGAAATTGAATTCAATCACAATCGAATGCTGCCAAGGTTTGACAGACACAGGGATCGAAGCTATTGGAAAGGGTTGTCCAAATGTGAAAAACTTCCAGCTTCGTAAATGTGCATACTTGTCAGACAAGGGGTTGGTATCATTTACCAGGGCTGCTCTATCAATTGAGAGTCTAAAATTGCACGAGTGCCACAGAATTACCCAAATTGGGCTTTTTGGTGTCTTTTTTCACTGTGCTGCCAAACTGAAGGTTCTTACTCTGATTAGCTGCTATGGGATCAAAGATCTGGACATGGATTTGCCAGCAATCTCTCCTTCTGAATCGTTTTGGTCCTTAACAATCCGTGACTGCCCTGGATTTGGGGACGCTAATCTTGCACTACTTGGGAAGCTGTGCCCTCGTCTTAAGCATGTTGAATTGAGTGGACTTCAGAGAGTAACAGACGTAGGGTTTCTTCCACTGCTGGAGTGTTCTGAGACTGGTCTGACAACAGTTAATTTAAGGGGGTGTCTGAATGTAACGGACAGAGTAGTTTTGTCTATTGTGAACTCATATGGATGGACTCTTCAGGTGCTATGCCTTGATGGTTGTACAAGAGTCACCGATGCTAGCATGATGGCAATTGCAGGCAATTGCCCGGTGCTGTCTGATCTTGATGTTTCCAAATGTGCAATCACTGATACCGGTATTGTAGCTCTTGCACGCGGAAAACAGTTCAACCTGGAGATTCTTTCTTTGGCAGGTTGTATATCGGTTTCAGACAATAGCATAGCGGCATTTAAAAAATTGGGTCAATCCCTTGCAGGCTTGAATATCAAGCGTTGCAGTGCAATCAGCAGCCGGGGCATCAGCAAGCTTCAGGAACATCTCTGGACGTGTGACATCCTCAACTGA 1935 0.4481 MSQVFSFSGNDDFYPGGCMYPNPKEPCLFLSLGRSVDYFPLQKRSRVSFPFDINREWFDEPKQKASIESLPDECLFEILRRLPVGQDRSVCASVSKRWLMLLSSICENEICNNGSTLDDNLVGDDDDEGFSNEGYLSRSLEGKKATDVRLAAIAVGTASRGGLGKLTIRGCNSDRGVTNVGLKAIAHGCPSLKVFSVFDVATIDDEGLIEIASGCHKLEKLDLCKCPNISDKSLIAISKKCPNLAELSIESCPNIGNEGLQAIGKLCSNLRSVSIKGCSGVGDQGVCGLMSSASYVLSKVKLESLMVSDLSLATIGHYGFQVTNLVLSGLPNVSEKGFWVMGNGRGLQKLNSITIECCQGLTDTGIEAIGKGCPNVKNFQLRKCAYLSDKGLVSFTRAALSIESLKLHECHRITQIGLFGVFFHCAAKLKVLTLISCYGIKDLDMDLPAISPSESFWSLTIRDCPGFGDANLALLGKLCPRLKHVELSGLQRVTDVGFLPLLECSETGLTTVNLRGCLNVTDRVVLSIVNSYGWTLQVLCLDGCTRVTDASMMAIAGNCPVLSDLDVSKCAITDTGIVALARGKQFNLEILSLAGCISVSDNSIAAFKKLGQSLAGLNIKRCSAISSRGISKLQEHLWTCDILN 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01971 644 Gene3D Ribonuclease Inhibitor 60 292 IPR032675 -
Vian4g01971 644 Gene3D Ribonuclease Inhibitor 293 458 IPR032675 -
Vian4g01971 644 Pfam Leucine Rich repeat 559 581 IPR001611 GO:0005515
Vian4g01971 644 Pfam Leucine Rich repeat 240 263 IPR001611 GO:0005515
Vian4g01971 644 FunFam EIN3-binding F-box protein 1 135 253 - -
Vian4g01971 644 SUPERFAMILY RNI-like 344 602 - -
Vian4g01971 644 FunFam EIN3-binding F-box protein 1 60 109 - -
Vian4g01971 644 FunFam EIN3-binding F-box protein 1 505 642 - -
Vian4g01971 644 FunFam EIN3-binding F-box protein 1 254 444 - -
Vian4g01971 644 SUPERFAMILY RNI-like 165 420 - -
Vian4g01971 644 SMART fbox_2 70 111 IPR001810 GO:0005515
Vian4g01971 644 SMART LRR_CC_2 585 610 IPR006553 -
Vian4g01971 644 SMART LRR_CC_2 241 266 IPR006553 -
Vian4g01971 644 SMART LRR_CC_2 559 583 IPR006553 -
Vian4g01971 644 SMART LRR_CC_2 215 240 IPR006553 -
Vian4g01971 644 SMART LRR_CC_2 611 636 IPR006553 -
Vian4g01971 644 SMART LRR_CC_2 479 504 IPR006553 -
Vian4g01971 644 SMART LRR_CC_2 533 558 IPR006553 -
Vian4g01971 644 SMART LRR_CC_2 347 372 IPR006553 -
Vian4g01971 644 SMART LRR_CC_2 189 214 IPR006553 -
Vian4g01971 644 SMART LRR_CC_2 267 292 IPR006553 -
Vian4g01971 644 SMART LRR_CC_2 506 531 IPR006553 -
Vian4g01971 644 SMART LRR_CC_2 399 424 IPR006553 -
Vian4g01971 644 SMART LRR_CC_2 373 398 IPR006553 -
Vian4g01971 644 SUPERFAMILY F-box domain 61 104 IPR036047 GO:0005515
Vian4g01971 644 PANTHER UNCHARACTERIZED 458 633 - -
Vian4g01971 644 Gene3D Ribonuclease Inhibitor 459 643 IPR032675 -
Vian4g01971 644 Pfam F-box domain 68 105 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01971 Vian-Chr4 36365729 36368314 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01971 K14515 - gmx:100805418 1037.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01971 4 36365729 36368314 Vian4g01971 4 36365729 36368314 ECH
Vian7g00423 7 11060047 11062588 Vian4g01971 4 36365729 36368314 PCT