Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00413 ATGGGTGGTAGAGGGATTAAGCTCTTTGATGAAGAAAGGAATGGTCTTTTCTCGATTTCCAATTTTGGGTCTCAATGGGGTGAGCGTGTTAACGACCCTATGGCTATGTTTGCTAGCGTTAGTCAAGTGGGAATGGGGTTTGGCGTTCAAGAGCCAAACCCTTCTTCTGGTGATTCCCAGCACAATGGGGGCATGAACATTAGGATCCCTTGCACTGAGTTGTACGTTAGGTATGTTCAATCAGAGGGGAAGGTGAAGATTACTGGGGTTCCTGGGGAAGAAGAGGGGGTGGCGGGTGTTAAGGGGAAGAAGAAGGGTGTCTTTAAAGGGTTGCAGATCAAGGTGAAGAACCCTTCTCTTAGGAGGTTGATTAGTGGTGCTTTTGCTGGGGCTGTGTCACGGACCACTGTGGCACCCTTGGAGACCATTAGGACTCATTTGATGGTAGGAAGTAGTGGGAATTCTACTGGGGAGGTCTTCAGCAATATCATGAAGACTGATGGATGGAAGGGCTTGTTTAGGGGTAATTTTGTTAATGTGATTCGGGTTGCACCCAGCAAGGCCATTGAGCTATTTGTATATGATACTGTTAACAAGAACCTGTCACCAAAGCCAGGGGAGCAGCCTAAACTCCCTATTTCTCCATCATTGATAGCAGGTGCTTGTGCTGGAGTTAGTTCAACAATATGCACATATCCTCTGGAGTTGCTAAAGACTCGTTTAACTATCCAGAGGGGTGTGTATGATGGTCTACTAGATGCATTCCTGAAAATAGTGAGAGAAGAGGGTGCTGGAGAACTTTACAGAGGCCTCACTCCCAGCCTTATAGGAGTAATACCATATTCTGCAACAAATTACTTTGCATATGACACCTTGAGGAAAGCATACAGAAAAATTTTCAAAAAGGAGAAGATTGGCAATATTGAAACCCTTTTGATAGGATCTGCAGCTGGTGCTATTTCAAGCAGTGCCACATTTCCTCTTGAAGTGGCACGCAAGCACATGCAAGTGGGAGCCCTGAGTGGAAGGCAAATATACAAAAATGTGATTCATGCCCTTGCAAGCATTCTTGAGCAAGAAGGGATTCAAGGATTGTACAAAGGGTTGGGACCTAGCTGCATGAAGTTGGTGCCAGCTGCAGGAATTTCTTTCATGTGCTATGAAGCATGCAAGAGGATACTGGTAGAGGACGATGAAGAGGAGTAG 1206 0.4569 MGGRGIKLFDEERNGLFSISNFGSQWGERVNDPMAMFASVSQVGMGFGVQEPNPSSGDSQHNGGMNIRIPCTELYVRYVQSEGKVKITGVPGEEEGVAGVKGKKKGVFKGLQIKVKNPSLRRLISGAFAGAVSRTTVAPLETIRTHLMVGSSGNSTGEVFSNIMKTDGWKGLFRGNFVNVIRVAPSKAIELFVYDTVNKNLSPKPGEQPKLPISPSLIAGACAGVSSTICTYPLELLKTRLTIQRGVYDGLLDAFLKIVREEGAGELYRGLTPSLIGVIPYSATNYFAYDTLRKAYRKIFKKEKIGNIETLLIGSAAGAISSSATFPLEVARKHMQVGALSGRQIYKNVIHALASILEQEGIQGLYKGLGPSCMKLVPAAGISFMCYEACKRILVEDDEEE 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00413 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 117 200 IPR018108 -
Vian7g00413 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 211 295 IPR018108 -
Vian7g00413 401 Pfam Mitochondrial carrier protein 305 396 IPR018108 -
Vian7g00413 401 Pfam Mitochondrial carrier protein 118 201 IPR018108 -
Vian7g00413 401 Pfam Mitochondrial carrier protein 211 298 IPR018108 -
Vian7g00413 401 SUPERFAMILY Mitochondrial carrier 118 389 IPR023395 -
Vian7g00413 401 Gene3D Mitochondrial carrier domain 113 399 IPR023395 -
Vian7g00413 401 PRINTS Mitochondrial carrier protein signature 268 286 IPR002067 GO:0055085
Vian7g00413 401 PRINTS Mitochondrial carrier protein signature 122 135 IPR002067 GO:0055085
Vian7g00413 401 PRINTS Mitochondrial carrier protein signature 314 336 IPR002067 GO:0055085
Vian7g00413 401 PRINTS Mitochondrial carrier protein signature 175 195 IPR002067 GO:0055085
Vian7g00413 401 PRINTS Mitochondrial carrier protein signature 226 244 IPR002067 GO:0055085
Vian7g00413 401 PRINTS Mitochondrial carrier protein signature 135 149 IPR002067 GO:0055085
Vian7g00413 401 PANTHER SOLUTE CARRIER FAMILY 25 114 394 - -
Vian7g00413 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 305 393 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00413 Vian-Chr7 10917904 10920574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00413 1 400 Organic Solute Cotransporters AT4G32400 63.145 4.60e-178 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00413 K14684 - gmx:100816041 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00413 7 10917904 10920574 Vian7g00413 7 10917904 10920574 ECH
Vian7g00413 7 10917904 10920574 Vian4g01960 4 36224985 36228095 PCT