Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01960 ATGAACCCCTACCAGAAAGAAAAAAGTAATCTTTGTAACAAATCACAAGTCACAAGGCCTTTGCCGTTGATGGGTAGGAGGAGAGTCCAACTGTTTGATGAGAAAAGTAATGGGTTTTTTTCTGTCAGCTGCTTGGGGTTTCAATCCGAAGATAGGTGCTACCAATTCGGAGGCTTGTTTGCCAGTGTTAGTCAGATGGGAGTGGGGGTTGGTGTGCAACCGAGTGATCCTTCTGATTCGCGCGACAATGGTGACACGAAACTTCCATTCAATGAACTGTTCATCAAGTACCAGGGAAAAGATGAGGTTGTTGAAGAAAGGGTTGATGGCAAGAAGAGAAAGGGTGGTGTTTCACTGAGGCTTAAGATAAAAAACCCTTCACTGAGAAGGTTGTTTAGCGGGGCAATAGCTGGGGCTGTGTCTCGGACTGCTGTGGCACCTTTGGAGACTATAAGAACTCTTATGATGGTGGGGAATAGTGACCATTCGACCACTGAGATGTTCCATAATATCGTGAAAACTGATGGCTGGAAGGGCTTGTTTAGGGGTAATTTTGTTAATGTCATTCGGGTTGCGCCTAGCAAGGCCATTGAGCTATTTACTTTCGATACAGTGAACAAGAACCTATCCCCAAAGCCTGGGGAAGAGTCCAAATTCCCAATTCCTGCATCATTGATTGCAGGTGCCTGTGCTGGAGTGACTTCAACTATATGTACCTATCCTCTTGAATTAGTCAAGACTCGACTAACTGTCCAGAGAGATGTTTATGATGGTCTGCTTCATGCATTCTTGAAAATAATCCGAGAAGAGGGTCCTGCAGAACTTTACAGTGGTCTTGCAGCTAGTCTTATAGGAGTTGTGCCCTATGCTGCAGCCAATTACTATGCCTATGACACTCTGAAGAAAGCATACAAGAAAGTTTTTAAACAAGAGAAGGTGGGGAATATTGAGACCCTTTTGATCGGTTCTGTAGCTGGTGCTATTTCAAGTAGTTCAACTTTTCCAATGGAGGTAGCTCGCAAGCAAATGCAGCTTGGTACCCTCAGTGGAAGACAGGTTTACAAGAATATGTTTCATGCCCTTGCTTGCATACTAGAACAAGAAGGGATCCAAGGTTTATACAGAGGGTTGGTACCAAGTTGCATGAAGTTGATACCGGCCGCTGGAATCTCTTTCATGTGCTACGAAGCATGCAAGAGGATCTTCCTAGAGGACGATGAGGAGGACTAG 1230 0.4472 MNPYQKEKSNLCNKSQVTRPLPLMGRRRVQLFDEKSNGFFSVSCLGFQSEDRCYQFGGLFASVSQMGVGVGVQPSDPSDSRDNGDTKLPFNELFIKYQGKDEVVEERVDGKKRKGGVSLRLKIKNPSLRRLFSGAIAGAVSRTAVAPLETIRTLMMVGNSDHSTTEMFHNIVKTDGWKGLFRGNFVNVIRVAPSKAIELFTFDTVNKNLSPKPGEESKFPIPASLIAGACAGVTSTICTYPLELVKTRLTVQRDVYDGLLHAFLKIIREEGPAELYSGLAASLIGVVPYAAANYYAYDTLKKAYKKVFKQEKVGNIETLLIGSVAGAISSSSTFPMEVARKQMQLGTLSGRQVYKNMFHALACILEQEGIQGLYRGLVPSCMKLIPAAGISFMCYEACKRIFLEDDEED 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01960 409 SUPERFAMILY Mitochondrial carrier 126 397 IPR023395 -
Vian4g01960 409 PRINTS Mitochondrial carrier protein signature 183 203 IPR002067 GO:0055085
Vian4g01960 409 PRINTS Mitochondrial carrier protein signature 276 294 IPR002067 GO:0055085
Vian4g01960 409 PRINTS Mitochondrial carrier protein signature 143 157 IPR002067 GO:0055085
Vian4g01960 409 PRINTS Mitochondrial carrier protein signature 234 252 IPR002067 GO:0055085
Vian4g01960 409 PRINTS Mitochondrial carrier protein signature 130 143 IPR002067 GO:0055085
Vian4g01960 409 PRINTS Mitochondrial carrier protein signature 322 344 IPR002067 GO:0055085
Vian4g01960 409 Pfam Mitochondrial carrier protein 313 404 IPR018108 -
Vian4g01960 409 Pfam Mitochondrial carrier protein 220 306 IPR018108 -
Vian4g01960 409 Pfam Mitochondrial carrier protein 126 209 IPR018108 -
Vian4g01960 409 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 303 IPR018108 -
Vian4g01960 409 Gene3D Mitochondrial carrier domain 122 407 IPR023395 -
Vian4g01960 409 ProSiteProfiles Solute carrier (Solcar) repeat profile. 125 208 IPR018108 -
Vian4g01960 409 PANTHER SOLUTE CARRIER FAMILY 25 125 402 - -
Vian4g01960 409 ProSiteProfiles Solute carrier (Solcar) repeat profile. 313 401 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01960 Vian-Chr4 36224985 36228095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01960 24 408 Organic Solute Cotransporters AT4G32400 64.031 1.04e-175 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01960 K14684 - gmx:100810035 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01960 4 36224985 36228095 Vian4g01960 4 36224985 36228095 ECH
Vian7g00413 7 10917904 10920574 Vian4g01960 4 36224985 36228095 PCT