Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00385 ATGCTCAAGCAAATCCTCAGCAAGCTTCCTCGGAAGTCGTTGAAACCCGACTCGGACGAGTCGTCTTGGGGTGACTCCGGGCTTTCAGCCGATTCGCCACGCGTTGCCGGTAAAAGCCAAAGACCACATGGCGGCAGTTCCACCGCTGCGAAGCGAGCTTCGTCATCGGCGGTGTTTCCGGCGAGCATGGTGTCCGGATTTGAACCTTTGGTGCCGTTTAAGGATGTTGCTAATGCTGAGAAGATGAACCTGTTCGTGAGCAAGTTGAGCCTTTGTTGTGTAACGTTTGATTTCAGTGACCCTAGTAAGAGCGTTGCAGATAAAGATGTGAAAAGAAAGACTTTGGTTGAGCTTGTTGATTTTGTGGCTTGTGGGACAATGAAGTTTAGTGAACCTGCTATTCTTGCTTTGTGTAGAATGTGCGCTTTCAATTTGTTTAGAGTTTTCCCTCCTAATTATAGGACATGTGGTGGTGAAAATGATGATGATGAACCTATGTTTGATCCTGCATGGCCACATTTGCAACTTGTGTATGAATTGCTGCTCAAGTTTATCTCTTCTTCGTGCCTCGATGCGAAGGTGGCGAAAAAGTATATTGATCATTCGTTTATTGCCAGATTGCTTGAGTTGTTTGATTCGGAGGATCCTAGGGAAAGGGATTGCTTGAAGGCAATTCTGCATAGGATTTATGGGAAGTTCATGGTGCATAGACCCTATATTCGGAAATCTATTAACAACATATTTTATCGGTTTGTGTTTGAGACTGAGAAGCACAGTGGGATTGGTGAGTTGTTGGAAATTTTTGGGAGTGTGATTACTGGGTTTGCTTTACCCTTGAAAGAGGAACATAAAATCTTCTTGTGGAGAGTTTTGGTCCCCTTGCACAAGCCGAAATCAATTGCGGTCTACTTTCAGCAATTGTCCTACTGTGTTATGCAGTTTATAGAAAAGGAGCCCAAGTTAGCGAGCATTGTCATAAGGGGCTTGTTGAAATATTGGCCAGCAACAAATAGTCAGAAAGAGGTGATCTTTCTGGGTGAACTGGAAGAAATTTTGGAAGTAATTAACATGGTAGAGTTCCAGAGGATCATGGTTCCTTTGTTTTGGCGGATTGGATGCTGCATAAACAGCTTACACTTTCAGGTAGCTGAAAGGGCCCTTTTCTTATGGAACAATGATCACATTGTCAACTTGATTGCACATAACCGGCAAGTGATCCTGCCCATCGTCTTTCCAGCTTTAGATAGGAATGTTCAAGGCCATTGGAACCCGGCAGTTGTCAACCTAACTCACAATATTAGAAAGATGTTCTTGGAGATGGATGAAAAGCTCTTCATTTATTGTCATAATCACTTTAAGGAGGAAGAAACAATCTTGACCTCTGCAGCAGAGAAGCGGAAGGAGGCATGGAAACAACTAGAGCATGCCGCCAGTCTCAGGCCTGTTACTGGAAATACTGCAGTGTTAGTGTCCTGA 1476 0.4397 MLKQILSKLPRKSLKPDSDESSWGDSGLSADSPRVAGKSQRPHGGSSTAAKRASSSAVFPASMVSGFEPLVPFKDVANAEKMNLFVSKLSLCCVTFDFSDPSKSVADKDVKRKTLVELVDFVACGTMKFSEPAILALCRMCAFNLFRVFPPNYRTCGGENDDDEPMFDPAWPHLQLVYELLLKFISSSCLDAKVAKKYIDHSFIARLLELFDSEDPRERDCLKAILHRIYGKFMVHRPYIRKSINNIFYRFVFETEKHSGIGELLEIFGSVITGFALPLKEEHKIFLWRVLVPLHKPKSIAVYFQQLSYCVMQFIEKEPKLASIVIRGLLKYWPATNSQKEVIFLGELEEILEVINMVEFQRIMVPLFWRIGCCINSLHFQVAERALFLWNNDHIVNLIAHNRQVILPIVFPALDRNVQGHWNPAVVNLTHNIRKMFLEMDEKLFIYCHNHFKEEETILTSAAEKRKEAWKQLEHAASLRPVTGNTAVLVS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00385 491 SUPERFAMILY ARM repeat 83 473 IPR016024 -
Vian7g00385 491 Gene3D - 78 476 IPR011989 -
Vian7g00385 491 MobiDBLite consensus disorder prediction 1 52 - -
Vian7g00385 491 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 77 476 - -
Vian7g00385 491 PIRSF PP2A_B56 8 489 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vian7g00385 491 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 72 477 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vian7g00385 491 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 478 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00385 Vian-Chr7 10420329 10422963 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00385 K11584 - gmx:100781390 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00385 7 10420329 10422963 Vian4g01927 4 35844846 35847131 PCT