Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01927 ATGCTGAAGCAATTCCTCAGCAGACTCCCCCGCAAGACACCAAAATCCGACTCGGACGAGTCATACCGAGCCGACCCATCACGCTCGGACGATTCCCCACGCGCCGCCGGCAGACACAATCGCACGCACGGCGTCGCCGCCGCTTCGAATGCTGCGAAACGGACATCCTCGTCCGCTGTTTTTCCGGCGAGCACGGTGTCGGTGATAGAACCTCTGGTACCTTTCAAAGATGTCCCCAGCTCGGAAAAGATGAACCTTTTCGTGAGCAAGCTGAGCCTGTGTTGCGTGTCCTTTGATTTCACGGACCCTGGTAAGGACACGGTGGAGAAAGAGGTGAAGAGAAGAACCCTTGTTGAACTTGTTGATTTTGTTTCCTCTTGTGGGTCCACGAGGTTCGGTGAACCTGCTATTCTTGCTGTGTGTAGAATGTGTGCTATTAATCTCTTTCGCGTTTTCCCGCCAAATTATAGGTCCAATCGTGGTGGTGAGAATGATGATGATGAGCCATCCTTTGATCCCGCATGGCCTCATTTGCAGCTCGTGTATGAGTTGCTGCTCAAGTTTATAACCTCTAACTGTCTTGATGCTAAGGTGGCCAAGAAGTACATCGACCATTCTTTTATCTTGAGATTGTTGGAGTTGTTTGATTCGGAAGATCCTAGGGAGAGGGACTGCTTGAAGACCATTATGCATAGGGTTTATGGCAAGTTCATGGTGCATAGACCCTACATAAGGAAATCCATTAACAACGTGTTTTTTAAGTTTGTGTTTGAGACTGAGAGGCACAACGGGATTGCTGAGTTGTTGGAGATTTTTGGGAGCATAATTAGTGGGTTCGCGTTGCCATTGAAGGAGGAGCATAAGATCTTCTTGTGGAGGGTTCTGATCCCCTTGCACAAGCCCAAATCTATGGGGGTATACTTCCAGCAGTTGTCTTACTGCGTTACACAGTTTGTCGAGAAGGAGCCTAAGTTGGGGAGCATTGTCATCCGGGGGATGTTGAAGTATTGGCCGATAACGAATAGTCAGAAAGAGGTGATGTTCCTGGGTGAACTGGAAGAAATTTTGGAAACAATTAACATGGTAGAGTTCCAGAGGGTCATGGTACCGTTGTTTTGGCGGATGGGATGCTGCATTAACAGTATGCACTTTCAGGTAGCTGAAAGAGCCCTTTTCTTATGGAACAACGATCATATTGTCAATTTGATTGCTCACAACCGACAAGTGATCCTGCCAATCATGTTTCCAGCCTTAGAGAAGAATTCTCAAGGCCACTGGAGCCAAGCAGTGCTCAACCTAACTCATAATGTTAGAAAAATGTTTGCAGAGATGGATGAGAAGCTATTCCTGGCTTGTCATTCTCAGTTTAAGGAAGAAGAAGCAATGCTAAACGCAGCAGAAGAGAAGCGGAAGGAAGCATGGAAACAACTAGAACATGCAGCCAGTCTCCAGCCTGTGATTGGAAATACCGCAGTTTTAGTGTCTCCAATTTGA 1494 0.4719 MLKQFLSRLPRKTPKSDSDESYRADPSRSDDSPRAAGRHNRTHGVAAASNAAKRTSSSAVFPASTVSVIEPLVPFKDVPSSEKMNLFVSKLSLCCVSFDFTDPGKDTVEKEVKRRTLVELVDFVSSCGSTRFGEPAILAVCRMCAINLFRVFPPNYRSNRGGENDDDEPSFDPAWPHLQLVYELLLKFITSNCLDAKVAKKYIDHSFILRLLELFDSEDPRERDCLKTIMHRVYGKFMVHRPYIRKSINNVFFKFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLWRVLIPLHKPKSMGVYFQQLSYCVTQFVEKEPKLGSIVIRGMLKYWPITNSQKEVMFLGELEEILETINMVEFQRVMVPLFWRMGCCINSMHFQVAERALFLWNNDHIVNLIAHNRQVILPIMFPALEKNSQGHWSQAVLNLTHNVRKMFAEMDEKLFLACHSQFKEEEAMLNAAEEKRKEAWKQLEHAASLQPVIGNTAVLVSPI 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01927 497 MobiDBLite consensus disorder prediction 10 38 - -
Vian4g01927 497 MobiDBLite consensus disorder prediction 1 49 - -
Vian4g01927 497 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 74 481 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vian4g01927 497 SUPERFAMILY ARM repeat 85 477 IPR016024 -
Vian4g01927 497 PIRSF PP2A_B56 4 494 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vian4g01927 497 Gene3D - 79 480 IPR011989 -
Vian4g01927 497 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 482 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vian4g01927 497 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 79 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01927 Vian-Chr4 35844846 35847131 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01927 K11584 - gmx:100808283 932.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01927 4 35844846 35847131 Vian4g01927 4 35844846 35847131 ECH
Vian7g00385 7 10420329 10422963 Vian4g01927 4 35844846 35847131 PCT