Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00328 ATGGCGACGTCGCTGGACGATGAAACTGCGAAGAAAGTCGTACGACAGGTGGAGTTCTACTTCAGTGATAGCAACCTTCCCACAGACAAATTTTTGAAGAAAACCGTCAGTGAAAGCGAAGATGGCATGGTTAGTTTGGCTCTTATTTGTTCTTTTAATCGGATGCGAAAGCACCTCAAACTAGAGGAAGTTAAGTCGGCTGAGGTGCCCGATGATACAGTCAAAGCTGTTGCTCAAGCTTTGAAAGATTCGGCTTTGGTCAGAGTCTCAGAAGATGGGAGCAAAGTTGGCAGGTCAACTAAGCTTCTGAAGCCAGAAGAGGTAATTGAGCAGGTAGAGATAAGAACAATTGCTGCATCGCCATTTCAATATGATGTTAAGCTTGAAGATGTGGAGGCATTCTTTGGTCAATATGCCAAGGTTAACAGCGTGCGGTTGCCTCGCCATGTTGGAGACAAAAGGATTTTTTGTGGCACTGCTCTTGTTGAGTTTTCATCAGATGAAGAAATGAAATTTTTTTTGAGGCAAAGTCTTGTCTATGCGGGGGCTGAGCTAGAGTTAAAGCCAAAGAAGGACTTTGACGTGCAGAGAGAGGAAGAATTAAAAGAGCAAGAAAAATTCCGTCCACCTGGGGGTATAGATCACCAAAATAACATTCATACAGAAGCAGACTACCCTAAAGGCTTACTTATAGCCTTCAAGCTAAAAACTATTTCTGATGAAGTTCCTTCAGAACAAAATAACCCTGAACAACAAACCAATGATGCTGATGATATCTCCAAAACCGATCAACAAAATCCATCTGAAATTGCTGCTGAGGAAAGTGGTAAAAAGACATCAGAAAATGATGAGAATGATAAAGAAAACAGTGAGGTGAGTGAAGGAAAAGGGACTGAGGGTGAGGAAAAGAGTAAAGAAACTGATGGAAAAAATTCTGCTACTCTGGACAAGGACAACAAGTTTGTTGTCTCACGAGAGGATTTGAAAGTTGTCTTTGAGAAGTTTGGTACCGTGAAGTACATTGATTTCAAGGTTGGAGAAGAGTCCGGATATATCCGATTTGAAGAACCTGAAGGTGCTCAGAAAGCTCGTGCAGCAGCAGTTCTTTCTGAAAAGAACGGCTTAGTTGTCAAGAATTATATTGCTACTCTGGATCCCGTGACTGGTGAGGTGGAGAGAGAATACTGGAGCCTGCTTCGTGGTAATCAGGAAAAACTCAGAGGATGGGAAGAAAGCATGGGAGAGGGGGTAAATTCAACCGGTCTCGAGAGAATGAATCTGCATTAA 1287 0.425 MATSLDDETAKKVVRQVEFYFSDSNLPTDKFLKKTVSESEDGMVSLALICSFNRMRKHLKLEEVKSAEVPDDTVKAVAQALKDSALVRVSEDGSKVGRSTKLLKPEEVIEQVEIRTIAASPFQYDVKLEDVEAFFGQYAKVNSVRLPRHVGDKRIFCGTALVEFSSDEEMKFFLRQSLVYAGAELELKPKKDFDVQREEELKEQEKFRPPGGIDHQNNIHTEADYPKGLLIAFKLKTISDEVPSEQNNPEQQTNDADDISKTDQQNPSEIAAEESGKKTSENDENDKENSEVSEGKGTEGEEKSKETDGKNSATLDKDNKFVVSREDLKVVFEKFGTVKYIDFKVGEESGYIRFEEPEGAQKARAAAVLSEKNGLVVKNYIATLDPVTGEVEREYWSLLRGNQEKLRGWEESMGEGVNSTGLERMNLH 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00328 428 Gene3D - 2 103 IPR036388 -
Vian7g00328 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 200 IPR000504 GO:0003723
Vian7g00328 428 MobiDBLite consensus disorder prediction 242 273 - -
Vian7g00328 428 Gene3D - 108 207 IPR012677 -
Vian7g00328 428 MobiDBLite consensus disorder prediction 194 210 - -
Vian7g00328 428 FunFam La protein 2 5 105 - -
Vian7g00328 428 PRINTS Lupus La protein signature 156 174 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vian7g00328 428 PRINTS Lupus La protein signature 42 57 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vian7g00328 428 PRINTS Lupus La protein signature 16 33 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vian7g00328 428 Pfam La domain 13 82 IPR006630 -
Vian7g00328 428 SUPERFAMILY "Winged helix" DNA-binding domain 6 102 IPR036390 -
Vian7g00328 428 Pfam RNA binding motif 323 406 IPR014886 GO:0003723
Vian7g00328 428 SMART la 7 99 IPR006630 -
Vian7g00328 428 SMART rrm1_1 116 188 IPR000504 GO:0003723
Vian7g00328 428 SMART rrm1_1 312 378 IPR000504 GO:0003723
Vian7g00328 428 MobiDBLite consensus disorder prediction 194 219 - -
Vian7g00328 428 SUPERFAMILY RNA-binding domain, RBD 321 403 IPR035979 GO:0003676
Vian7g00328 428 Gene3D - 295 411 IPR012677 -
Vian7g00328 428 CDD RRM1_La 116 188 - -
Vian7g00328 428 SUPERFAMILY RNA-binding domain, RBD 107 192 IPR035979 GO:0003676
Vian7g00328 428 MobiDBLite consensus disorder prediction 274 314 - -
Vian7g00328 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 175 IPR000504 GO:0003723
Vian7g00328 428 MobiDBLite consensus disorder prediction 242 314 - -
Vian7g00328 428 CDD LA_like_plant 9 98 - -
Vian7g00328 428 ProSiteProfiles La-type HTH domain profile. 3 108 IPR006630 -
Vian7g00328 428 PANTHER LUPUS LA PROTEIN-RELATED 10 312 IPR045180 -
Vian7g00328 428 ProSiteProfiles xRRM domain profile. 307 428 IPR014886 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00328 Vian-Chr7 9294069 9302587 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00328 K11090 - gmx:100792984 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00328 7 9294069 9302587 Vian7g00328 7 9294069 9302587 ECH
Vian7g00328 7 9294069 9302587 Vian4g01845 4 34793260 34796501 PCT