Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01845 ATGGCAACGCAATCGCTAGACGAAGAAACAACTAAGAAAGTGATACGACAAGTGGAGTTTTATTTCAGCGACAGCAACCTTCTCACCGATGGTTTTATGAGGAAGAGTATCACTGAAAGCGAAGATGGCTTGATTAGTTTGGCTCTGATTTGCTCTTTTAATCGGATGCGTAAGCACCTTAGTTTGGGTGATGTGAATCCCGATGGAGTGCCCCAAGATATCGTGAATGCTGTTGCGCAAACTTTGAGAAATTCGGCTTCACTCAAGATCTCTGAAGATGGGAAAAGAGTTGGCAGAACAACAGAACTTCCGAAACCAGAAGTTGTTGAGCAGGTGGAGATAAGAACACTTGCTGTATCACCATTTGAATATGATCTGAAACTTGAAGATGTGGAGAAATTCTTTGGTCAATATGCTAAGGTTAATAGTGTTCGGCTTCCCCATCATGTGCGAGACAAAAGGTTCTTCTGTGGCACTGCCCTTGTTGAATTCTCATCAGATGAAGAAGTAGAAAAAGTTATGAAAGAGAAATTTGTGTATGCTGGGGCTGAGTTAGAAGTAAAACTCAAGAAGGACTTTGATGCAGAGAGGGAAAAAGAATTAGAAGATTTTGAAAAATCTCGTCCACCTTTGGGTTCAAATCACCAGAATAACTCAAATGAAGAAGAAAGCTACCCTAAAGGCTTAATTATTGCCTTCAAACTAAAGAGTATTTCAGAAGAAATTCCGTCAGACCAAAGCGTTTCTGATCAACATAATAGTGCTGTCCCCAAAACAGGTGAAAAGTCTGAAATTGCTGCTGGAGAAAATGACCGAAAGGTGGATGAAGAAAACAATGAGACAAAAGAGGCAAAGGAAACTGGAAGTCAAGACAACAATCTGATGAAAGAAGCAAATGGAACTGGAAGTCAAATCAACAATGAGATGAGTGAATCCAAGGAAACTGGAAGTCAAGACAACAATGAGATGAAAGAAGAAAAGGAAACTGAAAGCAAAGAAAAGAATGAAACAACAGAAACAAATGAAACAGAAAGAGCAGAAAAGAAGCCACAAGCCGGTGAAAAATTTTCTGCTGCTGATTACAAGGACAACATGGATGTAGTCTCACGTGAGGATTTAAGGAGTGTCTTCGAAAACTTTGGTACAGTTAAGTACATCGATTTCAAGATTGGAGAAGTGTCAGGATATATTCGATTTGAAGAAACGGAAGCTTCTCAGAAAGCTCGTGCTGCTGCAGTTATTTCAGAAAAGGGCGGTTTGGTGGTAAAGAATTTCATTGCTATTTTAGATCCAGTGACTGGTGAGGCCGAAAAAGAATACTGGAGCCGTCTTCGTGGTAATCAAGGCAAACACCGAGAATTTAAGAATAAGCAGGGAAGGGGAGGATGGCATGGTAGAGGGAGCAAACATGCACGCTCTAGAGATAACGGTTCTAGATTTGGTCGTGCAAATAAGGCTCAGAAAATTGGTGCTGCATAA 1479 0.4057 MATQSLDEETTKKVIRQVEFYFSDSNLLTDGFMRKSITESEDGLISLALICSFNRMRKHLSLGDVNPDGVPQDIVNAVAQTLRNSASLKISEDGKRVGRTTELPKPEVVEQVEIRTLAVSPFEYDLKLEDVEKFFGQYAKVNSVRLPHHVRDKRFFCGTALVEFSSDEEVEKVMKEKFVYAGAELEVKLKKDFDAEREKELEDFEKSRPPLGSNHQNNSNEEESYPKGLIIAFKLKSISEEIPSDQSVSDQHNSAVPKTGEKSEIAAGENDRKVDEENNETKEAKETGSQDNNLMKEANGTGSQINNEMSESKETGSQDNNEMKEEKETESKEKNETTETNETERAEKKPQAGEKFSAADYKDNMDVVSREDLRSVFENFGTVKYIDFKIGEVSGYIRFEETEASQKARAAAVISEKGGLVVKNFIAILDPVTGEAEKEYWSRLRGNQGKHREFKNKQGRGGWHGRGSKHARSRDNGSRFGRANKAQKIGAA 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01845 492 MobiDBLite consensus disorder prediction 200 225 - -
Vian4g01845 492 MobiDBLite consensus disorder prediction 242 258 - -
Vian4g01845 492 CDD LA_like_plant 10 99 - -
Vian4g01845 492 ProSiteProfiles xRRM domain profile. 347 477 IPR014886 GO:0003723
Vian4g01845 492 SUPERFAMILY RNA-binding domain, RBD 368 453 IPR035979 GO:0003676
Vian4g01845 492 MobiDBLite consensus disorder prediction 242 357 - -
Vian4g01845 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
Vian4g01845 492 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Vian4g01845 492 MobiDBLite consensus disorder prediction 447 492 - -
Vian4g01845 492 PANTHER LUPUS LA PROTEIN-RELATED 10 337 IPR045180 -
Vian4g01845 492 Pfam RNA binding motif 368 460 IPR014886 GO:0003723
Vian4g01845 492 SUPERFAMILY "Winged helix" DNA-binding domain 6 107 IPR036390 -
Vian4g01845 492 SMART rrm1_1 116 188 IPR000504 GO:0003723
Vian4g01845 492 SMART rrm1_1 364 423 IPR000504 GO:0003723
Vian4g01845 492 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vian4g01845 492 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vian4g01845 492 PRINTS Lupus La protein signature 156 174 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vian4g01845 492 FunFam La protein 2 6 106 - -
Vian4g01845 492 Coils Coil 320 340 - -
Vian4g01845 492 MobiDBLite consensus disorder prediction 291 314 - -
Vian4g01845 492 SMART la 8 100 IPR006630 -
Vian4g01845 492 SUPERFAMILY RNA-binding domain, RBD 107 193 IPR035979 GO:0003676
Vian4g01845 492 Gene3D - 355 460 IPR012677 -
Vian4g01845 492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 176 IPR000504 GO:0003723
Vian4g01845 492 MobiDBLite consensus disorder prediction 210 224 - -
Vian4g01845 492 Gene3D - 108 205 IPR012677 -
Vian4g01845 492 MobiDBLite consensus disorder prediction 264 290 - -
Vian4g01845 492 MobiDBLite consensus disorder prediction 315 357 - -
Vian4g01845 492 CDD RRM1_La 116 188 - -
Vian4g01845 492 Gene3D - 2 104 IPR036388 -
Vian4g01845 492 Pfam La domain 14 83 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01845 Vian-Chr4 34793260 34796501 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01845 K11090 - gmx:100803099 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01845 4 34793260 34796501 Vian4g01845 4 34793260 34796501 ECH
Vian7g00328 7 9294069 9302587 Vian4g01845 4 34793260 34796501 PCT