Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00281 ATGCGTCCCCTAACGCGCAGTGATTTGCAGAGGATTTTTGAGAAAGTGGACATGAATGGAGATGGGTTTTTGAGCCTTGAGGAGCTGAAAATGCTGCTAGAGAAGACGGGTTTCAACTACAGTATGGAAGAGCTGGAGTCTCTGGTGGGAAAGAAGAAGCTTGACTTGAGTGAGTTCTTGTTGTTTTATGAATCTATGCTGAAGCAGAAGAATGAGGAAGAAGAAGGAACTCATGAGGGTGAGAATGATGATGATGATGATGATGAAGTTGAGGAGGTGGAGAGGGACCTCGTGAAGACTTTCAAGGTGTTTGATTTGGATGGAGATGGGTTCATCACAAGCCAAGAACTTGAGTGTGTGTTGAAGAGGCTTGGCATGTGGGATGAAAGGTGTGGCAAGGATAGCACATCCATGATTTGCTCCTATGACACTAATTTTGATGGCAAACTTGATTTTCAGGAATTCAAGGACATGATGCTTCTCACAACTTGA 492 0.439 MRPLTRSDLQRIFEKVDMNGDGFLSLEELKMLLEKTGFNYSMEELESLVGKKKLDLSEFLLFYESMLKQKNEEEEGTHEGENDDDDDDEVEEVERDLVKTFKVFDLDGDGFITSQELECVLKRLGMWDERCGKDSTSMICSYDTNFDGKLDFQEFKDMMLLTT 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00281 163 FunFam Probable calcium-binding protein CML44 5 66 - -
Vian7g00281 163 ProSiteProfiles EF-hand calcium-binding domain profile. 130 163 IPR002048 GO:0005509
Vian7g00281 163 Pfam EF hand 8 35 IPR002048 GO:0005509
Vian7g00281 163 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 66 159 - -
Vian7g00281 163 CDD EFh 8 60 IPR002048 GO:0005509
Vian7g00281 163 MobiDBLite consensus disorder prediction 70 92 - -
Vian7g00281 163 CDD EFh 96 159 IPR002048 GO:0005509
Vian7g00281 163 Gene3D - 84 160 - -
Vian7g00281 163 ProSitePatterns EF-hand calcium-binding domain. 105 117 IPR018247 -
Vian7g00281 163 Gene3D - 1 80 - -
Vian7g00281 163 MobiDBLite consensus disorder prediction 77 92 - -
Vian7g00281 163 FunFam Probable calcium-binding protein CML44 68 162 - -
Vian7g00281 163 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Vian7g00281 163 SMART efh_1 8 36 IPR002048 GO:0005509
Vian7g00281 163 SMART efh_1 96 124 IPR002048 GO:0005509
Vian7g00281 163 SMART efh_1 134 162 IPR002048 GO:0005509
Vian7g00281 163 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Vian7g00281 163 SUPERFAMILY EF-hand 8 160 IPR011992 -
Vian7g00281 163 ProSiteProfiles EF-hand calcium-binding domain profile. 92 127 IPR002048 GO:0005509
Vian7g00281 163 Pfam EF hand 97 118 IPR002048 GO:0005509
Vian7g00281 163 Pfam EF hand 142 159 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00281 Vian-Chr7 8259622 8260113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00281 4 160 EF-hand Containing Proteins AT1G21550 39.623 1.46e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00281 K13448 - gmx:100779760 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00281 7 8259622 8260113 Vian7g00281 7 8259622 8260113 ECH
Vian7g00281 7 8259622 8260113 Vian4g01482 4 29754207 29754674 PCT