Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01482 ATGTGTCTGCTAACCCAGTCTGATTTGAAGCGTATTTTTGAGAAAGTCGACGTCAATGGCGATGGCTTGCTGAGCCTTGAGGAGCTGAATCGGATGCTTGAAATCACTGGTACTTGTCAGTACAGCATACAAGAGTTGGAATCGCTGGTGGAAACGAAGAGCCTTGGTTTCAGCGAGTTCTTGTTCTTTTACAACTCCATTTCGGAGCAGCAGAATGGAGAAAGCAGAGGAAGTGGTGAGGCAGAGGAATTGGAGAGCGACCTGGTCAAAACCTTCAAGGTCTTTGACTTGGATGGCGATGGCTTCATCACCAGCCACGAGCTTGAGTCTGTCTTGAAAAGGCTTGGCATGTGGGATGACACCAACTGCAATGATTCTACAACCATGATTCGATTCTATGACACCAACTTCGATGGTCGTCTTGATTTTCAGGAATTCAAGAATATGATGTTGGTTTCCAGAGCCTGA 468 0.4637 MCLLTQSDLKRIFEKVDVNGDGLLSLEELNRMLEITGTCQYSIQELESLVETKSLGFSEFLFFYNSISEQQNGESRGSGEAEELESDLVKTFKVFDLDGDGFITSHELESVLKRLGMWDDTNCNDSTTMIRFYDTNFDGRLDFQEFKNMMLVSRA 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01482 155 SMART efh_1 8 36 IPR002048 GO:0005509
Vian4g01482 155 SMART efh_1 87 115 IPR002048 GO:0005509
Vian4g01482 155 SMART efh_1 125 153 IPR002048 GO:0005509
Vian4g01482 155 SUPERFAMILY EF-hand 7 151 IPR011992 -
Vian4g01482 155 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Vian4g01482 155 Gene3D - 3 75 - -
Vian4g01482 155 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Vian4g01482 155 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Vian4g01482 155 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 72 150 - -
Vian4g01482 155 FunFam Calmodulin A 4 153 - -
Vian4g01482 155 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Vian4g01482 155 Pfam EF hand 8 34 IPR002048 GO:0005509
Vian4g01482 155 Pfam EF hand 131 150 IPR002048 GO:0005509
Vian4g01482 155 Pfam EF hand 88 111 IPR002048 GO:0005509
Vian4g01482 155 ProSiteProfiles EF-hand calcium-binding domain profile. 121 155 IPR002048 GO:0005509
Vian4g01482 155 CDD EFh 87 150 IPR002048 GO:0005509
Vian4g01482 155 Gene3D - 76 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01482 Vian-Chr4 29754207 29754674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01482 4 151 EF-hand Containing Proteins AT1G21550 39.189 2.31e-32 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01482 K13448 - gmx:100527117 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01482 4 29754207 29754674 Vian4g01482 4 29754207 29754674 ECH
Vian7g00281 7 8259622 8260113 Vian4g01482 4 29754207 29754674 PCT