Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00235 ATGGATTTTAGAAGCAGGGGAATAACATGGCACACGCTTTTCCTATTATTTCTTCTATTTTCTGCCATTTTCCCACTCTCTTTCTCAGCAGCCAATCAACCCCACAAAGCCAAGAACCTCGCCACCCATCGCCTTTCCTCCTCAGCTGTTTTCAAAGTTCAAGGAAATGTGTACCCTCTTGGGCATTACACAGTGACTCTCAACATTGGCTATCCGGCCAAGCCTTACGACCTTGACATAGATTCGGGTAGTGACATCACTTGGGTTCAATGTGATGCACCATGTAAAGGTTGCACAAAGCCTCGTGACCAACTTTATAAACCCAATCACAACCTTGTGCAATGTGCGGAACAATTGTGTTCTGAAGTGCACTTACCAACAGACCATAATTGTGCTTCCCCAGATGACCAATGTGACTATGAAGTTGAGTATGCAGATAATGGATCATCTCTGGGTGTGCTAGTCCGGGACTACATTAATTTTCAATTCACCAATGGCTCTGTGGTCCGCCCTAAGATAGCCTTTGGGTGCGGATATGATCAAAAGTATGCTGGTTCTACCTCCCCACCTTCTACAGCAGGAGTCATTGGCCTTGGCAATGGCAGAGCAAGCATTTTAACTCAGCTTCATTCTTTAGGTCTGATACGCAATGTAGTTGGACACTGCCTAAGTTCAAGAGGAGGAGGGTTTTTATTCTTTGGAGATGATCCCGTTCCCACTTCAGGAATTTTTTGGACAACCATGCTGCATACTTCTTCGGAAAAACACTACAGCTCAGGACCAGCAGAGCTGTTGTTCAATGGAAAAGCTACGAAAGTTAAGGGTCTTCAACTTATCTTCGATAGCGGGAGCTCTTACACATATTTCAACTCCCTGGTGTATCAAGCTGTTGTAAATCTGGTGTCGGATGATTTAAAGGGGAAACAGTTGACAAGAGCAACCGATGATCCATCACTTCCAGTTTGTTGGAAGGGTCCAAAATCTTTCAAATCGTTAAGTGATGTCAAGAAATACTTCAAACCCCTAGCATTTATCTTCACAAAAACTAAGAATGTGCAGATGCACCTTCCGCCAGAAGCTTATCTTATTATCACTAAACATGGCAATGTCTGCTTTGGGATTCTTGATGGCACCGAAGTAGGACTTGAAAATCTCAACATAATAGGAGACATTTCTTTACAAGATAAAATGGTCATTTATGACAACGAGAAGCAGCAGATTGGATGGGCTTCTTCAAATTGTGATAGGCTTCCCAATGTGGAACGTGATTTGGAAGGCGATTTTCCACACCCATACGCAGCCAATTTGGGTATATTTGGGAACGGTTACCCTGCATCTTTTGAAAATATAGACGATCAATGA 1362 0.4317 MDFRSRGITWHTLFLLFLLFSAIFPLSFSAANQPHKAKNLATHRLSSSAVFKVQGNVYPLGHYTVTLNIGYPAKPYDLDIDSGSDITWVQCDAPCKGCTKPRDQLYKPNHNLVQCAEQLCSEVHLPTDHNCASPDDQCDYEVEYADNGSSLGVLVRDYINFQFTNGSVVRPKIAFGCGYDQKYAGSTSPPSTAGVIGLGNGRASILTQLHSLGLIRNVVGHCLSSRGGGFLFFGDDPVPTSGIFWTTMLHTSSEKHYSSGPAELLFNGKATKVKGLQLIFDSGSSYTYFNSLVYQAVVNLVSDDLKGKQLTRATDDPSLPVCWKGPKSFKSLSDVKKYFKPLAFIFTKTKNVQMHLPPEAYLIITKHGNVCFGILDGTEVGLENLNIIGDISLQDKMVIYDNEKQQIGWASSNCDRLPNVERDLEGDFPHPYAANLGIFGNGYPASFENIDDQ 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00235 453 PRINTS Pepsin (A1) aspartic protease family signature 69 89 IPR001461 GO:0004190|GO:0006508
Vian7g00235 453 PRINTS Pepsin (A1) aspartic protease family signature 278 289 IPR001461 GO:0004190|GO:0006508
Vian7g00235 453 PRINTS Pepsin (A1) aspartic protease family signature 386 401 IPR001461 GO:0004190|GO:0006508
Vian7g00235 453 Pfam Xylanase inhibitor C-terminal 275 410 IPR032799 -
Vian7g00235 453 Gene3D Acid Proteases 37 235 IPR021109 -
Vian7g00235 453 ProSiteProfiles Peptidase family A1 domain profile. 63 410 IPR033121 -
Vian7g00235 453 PANTHER ASPARTYL PROTEASES 42 408 IPR001461 GO:0004190|GO:0006508
Vian7g00235 453 Pfam Xylanase inhibitor N-terminal 63 235 IPR032861 -
Vian7g00235 453 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 78 89 IPR001969 GO:0004190|GO:0006508
Vian7g00235 453 FunFam Aspartic proteinase Asp1 isoform A 239 418 - -
Vian7g00235 453 SUPERFAMILY Acid proteases 55 419 IPR021109 -
Vian7g00235 453 CDD nucellin_like 61 414 IPR033823 GO:0004190
Vian7g00235 453 FunFam Aspartyl protease family protein 39 235 - -
Vian7g00235 453 Gene3D Acid Proteases 245 421 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00235 Vian-Chr7 7263438 7266443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00235 19 421 Miscellaneous Gene Families AT1G77480 57.426 5.90e-168 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00235 - - gmx:100790299 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00235 7 7263438 7266443 Vian7g00235 7 7263438 7266443 ECH
Vian7g00235 7 7263438 7266443 Vian4g01048 4 16514263 16518133 PCT