Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01048 ATGACATCAGCCAATTGGAGATTATTGCTGCTGCTGCTCTTCTTCACCTCCTCTACTTCTTCAGCATGGTTCGGCACCAAACACAAAAGTTCCGGTGCAAGTTCCAGCTCAAGTGGAAGGTTTCGTTCCGATGAATCCTCGTCTTCATCGTCATCCTCGTCACCGTTCCTACTAAACCGTTTCCGTTCCGGTTCAGCCGTGGTGTTCCCTGTTCACGGCAATGTTTACCCTGTCGGGTTTTATAATGTCACTCTCAACATCGGGCAACCACCTAGGCCATATTTTCTTGATATTGACACAGGTAGCGACCTTACGTGGCTTCAATGTGATGCCCCTTGTTCCCGTTGCTCTCAGACACCACATCCACTTTATAGGCCCAGCAATGACTTAGTGCCATGCAGGCATGCCCTTTGTGCATCCTTGCACCATAATGATAACTACGACTGTGAAGTTCCGCATCAATGTGACTATGAAGTTGAGTATGCAGATCATTATTCATCCCTTGGTGTACTTCTCCATGATGTCTACACTCTCAATTTTACAAATGGAGTCCAACTTAAAGTTCGTATGGCCCTTGGATGCGGATATGATCAGATTTTTCCAGATCCTTCTCATCACCCGTTAGATGGCATGCTTGGCCTTGGCAGGGGAAAAACTAGCTTGACATCACAGCTGAATAGTCAGGGTTTGGTGCGAAATGTGGTTGGACACTCAGGGGCAGCTGAACTCCTTTTCGGAGGAAAGAGGACTGGGGTTGGAAATCTTCATGCTACTTTTGACACTGGGAGTTCTTACACCTACTTCAACTCTAATGCTTACCAACTACTAATCTCTTGGTTGAGGAAGGAATCAGGTGGAAAGCCCCTAAAAGAAGCACACGGTGATCAAACTCTTCCTCTCTGTTGGCATGGCAAAAGACCTTTCAAAAGCATATATGAAGTGAGAAAATACTTTAAGCCAATCACGCTTAGTTTCAGTAGCAATGGCAGAAGTAAAGCTCTGTTTGAAATCCCTCCTGAAGGATATCTAATAATATCTCAGAATATGGGAAATGTTTGCTTGGGCATTCTAAACGGCTCTGAAGTAGGAATGGGTGATCTGAACCTAATAGGAGACATATCCATGCTAAACAAAGTGATGGTATTTGACAACGACAAGCAGTTGATCGGTTGGACATCGGCAGATTGTGATCGGGTTCCAAAATCCAGAGATGTCAGCATTTGA 1224 0.4502 MTSANWRLLLLLLFFTSSTSSAWFGTKHKSSGASSSSSGRFRSDESSSSSSSSSPFLLNRFRSGSAVVFPVHGNVYPVGFYNVTLNIGQPPRPYFLDIDTGSDLTWLQCDAPCSRCSQTPHPLYRPSNDLVPCRHALCASLHHNDNYDCEVPHQCDYEVEYADHYSSLGVLLHDVYTLNFTNGVQLKVRMALGCGYDQIFPDPSHHPLDGMLGLGRGKTSLTSQLNSQGLVRNVVGHSGAAELLFGGKRTGVGNLHATFDTGSSYTYFNSNAYQLLISWLRKESGGKPLKEAHGDQTLPLCWHGKRPFKSIYEVRKYFKPITLSFSSNGRSKALFEIPPEGYLIISQNMGNVCLGILNGSEVGMGDLNLIGDISMLNKVMVFDNDKQLIGWTSADCDRVPKSRDVSI 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01048 407 ProSiteProfiles Peptidase family A1 domain profile. 81 392 IPR033121 -
Vian4g01048 407 SUPERFAMILY Acid proteases 73 399 IPR021109 -
Vian4g01048 407 PRINTS Pepsin (A1) aspartic protease family signature 87 107 IPR001461 GO:0004190|GO:0006508
Vian4g01048 407 PRINTS Pepsin (A1) aspartic protease family signature 368 383 IPR001461 GO:0004190|GO:0006508
Vian4g01048 407 PRINTS Pepsin (A1) aspartic protease family signature 257 268 IPR001461 GO:0004190|GO:0006508
Vian4g01048 407 Pfam Xylanase inhibitor N-terminal 81 237 IPR032861 -
Vian4g01048 407 Pfam Xylanase inhibitor C-terminal 254 392 IPR032799 -
Vian4g01048 407 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 257 268 IPR001969 GO:0004190|GO:0006508
Vian4g01048 407 MobiDBLite consensus disorder prediction 24 55 - -
Vian4g01048 407 FunFam Aspartyl protease family protein 58 248 - -
Vian4g01048 407 PANTHER ASPARTYL PROTEASES 256 390 IPR001461 GO:0004190|GO:0006508
Vian4g01048 407 Gene3D Acid Proteases 59 243 IPR021109 -
Vian4g01048 407 Gene3D Acid Proteases 244 400 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01048 Vian-Chr4 16514263 16518133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01048 39 403 Miscellaneous Gene Families AT1G77480 46.287 8.87e-124 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01048 - - vum:124823021 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00235 7 7263438 7266443 Vian4g01048 4 16514263 16518133 PCT