Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00040 ATGGCTTCTTCTGTTGCCTTAGTTTTCAGTGTTTGTCTAGCACTCAACATGGTCATGCCAATCCTTGCAGCCACCCACACAGTGGGAGATACCTCAGGTTGGGCAATTGGTGGTGATTACAGTACATGGGCTAGTGGATTGAAATTTAGAGTTGGAGATAGTCTTGTTTTCAATTACGGTCCTGGTCACACTGTGGATGAAGTAAAAGAAAGCGATTACAAGAGTTGCAGTACAGGAAATTCTCTGAGCACAGACAGCAGCGGCGCCACCACCATTACCCTGAAGACTGCTGGCACTCATTACTTCATATGTGCTGCTCCTGGCCATTGTCAGGGTGGCATGAAACTTGCTGTTAAGGTTAAGGCTAAAAAGGTTTCTGATTCTGCTGCTGCACCTTCACCTGCTAAGGACTCACCACCCTCTGACTCTGATAACACCAAAGACACTCCTACTACTTCCACCACCACCTCTACAACTCCAACCTCCACCACCCCTTCTTCTTCAACCTCCTCCGCCACCACTGCCACAACATCATCGGCAATTCCTGCCTCACCCATTGGTGTAGCTGTGTTTATTGGTTGTTGGATCTCATACTCGGTGTTGCGTCTGCTGTGA 615 0.4829 MASSVALVFSVCLALNMVMPILAATHTVGDTSGWAIGGDYSTWASGLKFRVGDSLVFNYGPGHTVDEVKESDYKSCSTGNSLSTDSSGATTITLKTAGTHYFICAAPGHCQGGMKLAVKVKAKKVSDSAAAPSPAKDSPPSDSDNTKDTPTTSTTTSTTPTSTTPSSSTSSATTATTSSAIPASPIGVAVFIGCWISYSVLRLL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00040 204 ProSitePatterns Type-1 copper (blue) proteins signature. 98 114 IPR028871 -
Vian7g00040 204 PANTHER BLUE COPPER PROTEIN 22 152 IPR039391 GO:0009055
Vian7g00040 204 MobiDBLite consensus disorder prediction 127 177 - -
Vian7g00040 204 ProSiteProfiles Phytocyanin domain profile. 24 122 IPR003245 GO:0009055
Vian7g00040 204 FunFam Blue copper 22 126 - -
Vian7g00040 204 Pfam Plastocyanin-like domain 37 114 IPR003245 GO:0009055
Vian7g00040 204 CDD Phytocyanin 24 114 - -
Vian7g00040 204 SUPERFAMILY Cupredoxins 23 120 IPR008972 -
Vian7g00040 204 MobiDBLite consensus disorder prediction 138 177 - -
Vian7g00040 204 Gene3D - 22 127 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00040 Vian-Chr7 1873229 1874221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00040 12 123 Miscellaneous Gene Families AT1G22480 53.571 8.00e-34 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00040 - - gmx:100305666 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00040 7 1873229 1874221 Vian7g00040 7 1873229 1874221 ECH
Vian7g00040 7 1873229 1874221 Vian4g01676 4 32752784 32753436 PCT