Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01676 ATGGCTTCCTCCACTGCTTTGGTTTTCGGCTCACTCATAGCAATCACCATGGTTCTGCCAACCCTCGCAACCGTCCACACCGTCGGAGATTCTTCAGGTTGGGCAATTGGTTCTGATTATAGCTCATGGACCAGTGACAAAGCCTTCGCAGTGGGTGATAGTCTTGTGTTCAACTATGGAGCTGGGCACACAGTGGATGAAGTTAAAGAGAGTGACTACAAATCATGCAGCGCAGGGAATTCAATTAGTACAGACAGTAGTGGCGCAACCACCATTGCCCTCAAGACTGCAGGCACTCATTACTTCATATGTTCTGTTCCCGGACATTGTTCTGGCGGCATGAAACTTGCCGTCACTGTCAAAGCAGGAAAAGACACTACTCCTTCAACTGGGAAGGCTCCACCTTCTGATGGTACGGCCACCACAGCCACGCCAGCCACCACCACCACCACCACCACAACCACTGCTGGTAGATCAAACTCGGCTTCAACAACTGGTGTGTTTTCAGTTGTTTCCATGTTGATTGTTTCAGGGATCTCTTTCTTTGGCTTGCGCATGGCGTGA 564 0.5018 MASSTALVFGSLIAITMVLPTLATVHTVGDSSGWAIGSDYSSWTSDKAFAVGDSLVFNYGAGHTVDEVKESDYKSCSAGNSISTDSSGATTIALKTAGTHYFICSVPGHCSGGMKLAVTVKAGKDTTPSTGKAPPSDGTATTATPATTTTTTTTTAGRSNSASTTGVFSVVSMLIVSGISFFGLRMA 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01676 187 SUPERFAMILY Cupredoxins 23 120 IPR008972 -
Vian4g01676 187 FunFam Blue copper 22 126 - -
Vian4g01676 187 ProSitePatterns Type-1 copper (blue) proteins signature. 98 114 IPR028871 -
Vian4g01676 187 Pfam Plastocyanin-like domain 35 114 IPR003245 GO:0009055
Vian4g01676 187 Gene3D - 22 127 IPR008972 -
Vian4g01676 187 CDD Phytocyanin 24 120 - -
Vian4g01676 187 ProSiteProfiles Phytocyanin domain profile. 24 122 IPR003245 GO:0009055
Vian4g01676 187 MobiDBLite consensus disorder prediction 124 162 - -
Vian4g01676 187 PANTHER BLUE COPPER PROTEIN 23 146 IPR039391 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01676 Vian-Chr4 32752784 32753436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01676 15 120 Miscellaneous Gene Families AT1G22480 57.547 2.00e-37 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01676 - - var:108331136 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01676 4 32752784 32753436 Vian4g01676 4 32752784 32753436 ECH
Vian7g00040 7 1873229 1874221 Vian4g01676 4 32752784 32753436 PCT