Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00008 ATGGCTATGTGCTTCTCTATTTTGACTGTAAGGAAGGAGAAATACAAGGGAAGTGGAAGGTCTTCAAAGGAAGATTTTAGCACTCTACTTGCCAAACTACAATCTTCAAAAATAGCATCAGTGCCAACCACTTTTGATGCCACATTATCCAATGGTATTCCCAAAAATTCAAGTTTCAATTCAGGGGTTATGAGTCCTGATACTTGTGTGGAGGCTGAAGTACAGGAGGCTTATGAACGGGAAGATGAGGATGAAGATTCACTGAAGATCAAGAGGGAAATCTCTGATTTTGATCTCCAAGATCATGAAGCTGTTGCAGACAAAGGATATGGTGCCACTGATAAAGAAATAGAGTATCCTATTTTGTATGAAAATCAAGTCAACGAAGAATCGGATGACAGAACCGACAAATACAGCCAAAAGAGTGTTGAAACAACCGAAAGTGGACTCGTCAGTGATCCTGGGATTCGCAAAGCTGATTTGTGGACTTCTGCAAAGTTCAAGAGACACTTCTCTAACCTTGAAAAGTTTGATGAGCATGGTACGAAAACTCGTTTTTTGACAGCTTTAAAGTCAAAGCCTTTTGATAATTTTAAGGAATTATCAGCAATGGTTAATCTTGAAAGCCCTTGGTCAGTGAAGAGTCACTACAGTGCTGATAGAGTAGTGCTGAAAAGGCATTCTTCAAGTCAGTTACTTCCTTCTGGAAAGAAAAAATTGTGGTGGAAAATGATCCTGCGGAGCCACAGGAACATACACAGAACTTTCTCTGGCAATTCAACGCTGGTTCCTGCCAGTGCTGCATTAAATAGTGGGTACTCTTCAGACACCCTTGAACCAAAACAAGGAAAGACAATGAGGCCTGTGAAATCCTCTGGTTCAATTACTGCAGAATCCTTTAACAAAAGAAGAACTGGTAAAAGTACAGATAATAAAAAGGGGAGCAGGTTTCAAAGTGACCAATGGCTTGCTTTCTCCAAAGCGTCATCATCCTCTTTTGCCAGAGTGGATGCATGGGTGAAAGGTCTTGAAATTCAACAACTACTTCCTGAGGATGATTTTGATGTTGACAATGGCAGAAGCATAACCTTCCCACCTTCCCCTGATACTGGTGGAACAATGATGAGAGCCACATCTCAGTTGACTTATGCAGACGCCAATTTTTCAAAAGAGACTTTAACTGCCATTAGTGTAGTCCAGTCTCTAAATCCAGCTTCATCTATTGCTCACATATCTGGTATTGGTGTAAAAGCCATCCCTGCTATTTCACACTTATCCAATCTCCGCTCTGTCAACCTGTCAAACAATTTCATAGCTCACATCTCACCGGGATTTCTACCAAAGGGTATTCAAACACTTAACTTGTCAAGAAACAAGATCAGCACTCTTGACGGCCTCAGAGAATTGACCAAGTTGCGGGTAATTGACCTGAGTTACAACCGCATCTCGAGAATTGGACAAGGTTTGTCAAGTTGCACACTTGTCAAAGAACTATATCTTGTGGGGAACAAGATAAGTGATGCTGAAGGGCTACACAGGCTATTGAAACTAACACTTCTAGATTTGAGCTTCAACAAGATCACAACAACAAAAGCAATAGGCCAGCTAGTAGCTAACTACAACTCACTTAAGGCTCTTAATCTGCTGGGAAATCCAATTGAAAGAAACATCAGCTATGGCGAGCTAACTAAAGCAGTCTCTGGTCTTCTTCCAAATTTGGTGTACCTTAACAAACAACCACTCAAGGCTCAAAGGACACGCGAAATATTAAGTGACAGTGTTGCCAGAACTGCCCTTGGGAACAGCACGCGGAGCTGTGACAAAAGATCAATAAGAAAACCTACTCATGGAGGATCAACTCTTTCCAAAGGGTATAGAAGAAGTGCAAGTGCTTCCCACAAAAGCACGAACCGAACAAGGAGGTGA 1926 0.4159 MAMCFSILTVRKEKYKGSGRSSKEDFSTLLAKLQSSKIASVPTTFDATLSNGIPKNSSFNSGVMSPDTCVEAEVQEAYEREDEDEDSLKIKREISDFDLQDHEAVADKGYGATDKEIEYPILYENQVNEESDDRTDKYSQKSVETTESGLVSDPGIRKADLWTSAKFKRHFSNLEKFDEHGTKTRFLTALKSKPFDNFKELSAMVNLESPWSVKSHYSADRVVLKRHSSSQLLPSGKKKLWWKMILRSHRNIHRTFSGNSTLVPASAALNSGYSSDTLEPKQGKTMRPVKSSGSITAESFNKRRTGKSTDNKKGSRFQSDQWLAFSKASSSSFARVDAWVKGLEIQQLLPEDDFDVDNGRSITFPPSPDTGGTMMRATSQLTYADANFSKETLTAISVVQSLNPASSIAHISGIGVKAIPAISHLSNLRSVNLSNNFIAHISPGFLPKGIQTLNLSRNKISTLDGLRELTKLRVIDLSYNRISRIGQGLSSCTLVKELYLVGNKISDAEGLHRLLKLTLLDLSFNKITTTKAIGQLVANYNSLKALNLLGNPIERNISYGELTKAVSGLLPNLVYLNKQPLKAQRTREILSDSVARTALGNSTRSCDKRSIRKPTHGGSTLSKGYRRSASASHKSTNRTRR 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00008 641 ProSiteProfiles Leucine-rich repeat profile. 449 470 IPR001611 GO:0005515
Vian7g00008 641 Gene3D Ribonuclease Inhibitor 490 586 IPR032675 -
Vian7g00008 641 MobiDBLite consensus disorder prediction 129 150 - -
Vian7g00008 641 Gene3D Ribonuclease Inhibitor 363 489 IPR032675 -
Vian7g00008 641 MobiDBLite consensus disorder prediction 273 302 - -
Vian7g00008 641 MobiDBLite consensus disorder prediction 601 641 - -
Vian7g00008 641 Pfam Leucine Rich Repeat 427 448 IPR001611 GO:0005515
Vian7g00008 641 SUPERFAMILY Outer arm dynein light chain 1 419 579 - -
Vian7g00008 641 ProSiteProfiles Leucine-rich repeat profile. 471 493 IPR001611 GO:0005515
Vian7g00008 641 PANTHER NISCHARIN RELATED 207 635 - -
Vian7g00008 641 MobiDBLite consensus disorder prediction 615 632 - -
Vian7g00008 641 FunFam Protein phosphatase 1 regulatory subunit pprA 386 567 - -
Vian7g00008 641 MobiDBLite consensus disorder prediction 273 315 - -
Vian7g00008 641 SMART LRR_typ_2 514 536 IPR003591 -
Vian7g00008 641 SMART LRR_typ_2 469 492 IPR003591 -
Vian7g00008 641 SMART LRR_typ_2 425 447 IPR003591 -
Vian7g00008 641 Pfam Leucine Rich repeats (2 copies) 450 485 IPR025875 -
Vian7g00008 641 SMART LRR_sd22_2 492 513 - -
Vian7g00008 641 SMART LRR_sd22_2 514 535 - -
Vian7g00008 641 SMART LRR_sd22_2 469 491 - -
Vian7g00008 641 SMART LRR_sd22_2 447 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00008 Vian-Chr7 614198 616427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00008 420 581 Receptor kinase-like Gene Family AT5G56040 33.333 4.41e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00008 - - gmx:100801034 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00008 7 614198 616427 Vian7g00008 7 614198 616427 ECH
Vian7g00008 7 614198 616427 Vian4g01655 4 32498190 32500651 PCT