Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01655 ATGGCCTTGTGCAGGTGTCTCTCCTTTTTTACTGGAAAGAAAGAGAAAAACAAGGGTGCTGCTGAAGGGTCTGCAACCGGGGACCTTAAAGCTCAACTTGGCGAAATACAGCACCCGAAGATTTCATCAGAGCGTCGTGATTTGAAGCCGGCCACCCTTGATGTCACGGTACCCTTTGGTGTGCAGAAGAATTCAAGGGGAAATGTGAGGATTATGAATCATGAGAGTCCTGCTAAAACTGAAGTGGAGGAAGCTTATGAAGGAGAAGACGAGCATGAGCAGTCTCCTTCCATCAAGAGGGAGCTCTCTGATTTTGATCTTCAAGTCCACCAAGCTGCTGCAAACAAAGGAATATGTGATCCATCAAATGAAGAGTTAAAATACCCGAGTCTGTATGAAGACCAAGCTAACATTCAATTCGAAGACACAGACCATAAATACAGCATAAAGAGTAATGATATGATCCAAAGTGGACATGTCAGTGATCCCGGGATTGGCAAGACTCACTTTTGGGCTTCTCCAGAGCTCAAGAGATCTTGTTCTGACCTGGAAAGAAGGGATGTACTTATGAAGACTGCTCATCTCTTTCCAACTTCCAAGTCACAGTCTTTTGAGGATTTACACGGATTATCAGCATATCAGATGGTTAATCTAGAAAGCCCCAGGTCTGCGATGACTCACTGCAGTGCTGATAAAGTGATGTTGAAAAGGCATTCCTCAAGTCAAGTTCTCCCTTCAAGAAGTAAAAGATTGTGGTGGAAGTTGTTCCTCTGGAGCCACAGGAATATACATAGGTCTAAGTTAAGCAAATCGACACAGATACATCCTGCAATTGCTGCTTTGAGTAGTCAATGTGGGTACTCCTCCGACACCCTTGAACCAAAGCAAGGCAAGGCATTGAGACACGAAGAATCACCCTCACCAACCTCATCTTTTGGGGAATACTTTCAGAAAAGATGCGATGAACAAAATATTGTTGACCAAAGGTGGAGCAGATTTCAGAAAGACCATTTTGGATTTTGGCCACAAAACCAATGGGTGGCTTTCTCAGCCGAATCATCCTCGCTTAGCAGAGTGGATGAGTGGGTGAAAGATCTCGAAATTCAGCAGCCACCTCCCGAGGATGACTTTGGTGATGACGGCATTGGAAACATTGCCTTCCCACCTTCTCCTGATAATGGTAGATCAATGGCAAGAAGCACATCTCAGTTGATTCGACATTCAGATGCCAATATTTCAAAAGAGATAATGAATGCCAATAGTCTGGTCCAGTCCCTGAACCCCGCCTCAACTGCTGCTCATATATCAGGCATTGGTATAAAAGCCATTCCCTCTCTTTCACACTTCTTCAGTCTCCGCTCTGTCAATTTGTCAAGCAACCTTATAGCTCACATCACGCCTGGATTTCTCCCAAAGGGTATTCATACCCTGAATCTTTCAAGAAACAAAATCAACATTATTGAGGGCCTCAGAGAATTAACCCGGCTCCGGGTACTTGATTTAAGTTATAATCGCATCTCAAGAATTGGACAAGGATTATCAAATTGTACCTTAGTCAAAGAGCTATATCTTGCCGGGAACAAGATAAGTGATGTTGAGGGGCTCCACAGGTTACTGAAGCTGACAGTTCTGGACTTGAGCTTTAACAAGATCGCAACCACAAAAGCATTAGGCCAGCTGGTGGCTAACTACAACTCACTTCAGGCCTTGAGTCTGCTAGGAAATCCAATTCAAAGCAACATCAGTGATGAGCAGCTGCGCAAAGCAGTTAGTGGTCTTCTTCCAAAGCTTGTGTACCTGAACAAGCAATCTATAAAGCCTCAAAGGGGACGAGAAATACTCACTGATAGTGTTGCCAAAGCTGCACTTGGGAACAGCGGCCACAACTCCTACAGAAGAGTACTGAAGAAAGGTGGTGGCCAAGGAGGGCCAAGTTCCTCAGGTGTGCATAGAGGCGGTGCTAGTGTTTCCCACAATAGCAGGCACAGGTCAAGGAGCCGAACTAAGCGTCATTAG 2016 0.4499 MALCRCLSFFTGKKEKNKGAAEGSATGDLKAQLGEIQHPKISSERRDLKPATLDVTVPFGVQKNSRGNVRIMNHESPAKTEVEEAYEGEDEHEQSPSIKRELSDFDLQVHQAAANKGICDPSNEELKYPSLYEDQANIQFEDTDHKYSIKSNDMIQSGHVSDPGIGKTHFWASPELKRSCSDLERRDVLMKTAHLFPTSKSQSFEDLHGLSAYQMVNLESPRSAMTHCSADKVMLKRHSSSQVLPSRSKRLWWKLFLWSHRNIHRSKLSKSTQIHPAIAALSSQCGYSSDTLEPKQGKALRHEESPSPTSSFGEYFQKRCDEQNIVDQRWSRFQKDHFGFWPQNQWVAFSAESSSLSRVDEWVKDLEIQQPPPEDDFGDDGIGNIAFPPSPDNGRSMARSTSQLIRHSDANISKEIMNANSLVQSLNPASTAAHISGIGIKAIPSLSHFFSLRSVNLSSNLIAHITPGFLPKGIHTLNLSRNKINIIEGLRELTRLRVLDLSYNRISRIGQGLSNCTLVKELYLAGNKISDVEGLHRLLKLTVLDLSFNKIATTKALGQLVANYNSLQALSLLGNPIQSNISDEQLRKAVSGLLPKLVYLNKQSIKPQRGREILTDSVAKAALGNSGHNSYRRVLKKGGGQGGPSSSGVHRGGASVSHNSRHRSRSRTKRH 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01655 671 FunFam Outer arm dynein light chain 1 protein 512 610 - -
Vian4g01655 671 ProSiteProfiles Leucine-rich repeat profile. 473 494 IPR001611 GO:0005515
Vian4g01655 671 Gene3D Ribonuclease Inhibitor 392 510 IPR032675 -
Vian4g01655 671 Gene3D Ribonuclease Inhibitor 511 610 IPR032675 -
Vian4g01655 671 MobiDBLite consensus disorder prediction 629 671 - -
Vian4g01655 671 MobiDBLite consensus disorder prediction 288 314 - -
Vian4g01655 671 ProSiteProfiles Leucine-rich repeat profile. 518 539 IPR001611 GO:0005515
Vian4g01655 671 MobiDBLite consensus disorder prediction 656 671 - -
Vian4g01655 671 FunFam Outer arm dynein light chain 1 protein 398 511 - -
Vian4g01655 671 Pfam Leucine Rich repeat 540 551 IPR001611 GO:0005515
Vian4g01655 671 ProSiteProfiles Leucine-rich repeat profile. 495 517 IPR001611 GO:0005515
Vian4g01655 671 ProSiteProfiles Leucine-rich repeat profile. 540 561 IPR001611 GO:0005515
Vian4g01655 671 Pfam Leucine rich repeat 451 506 IPR001611 GO:0005515
Vian4g01655 671 SMART LRR_sd22_2 471 492 - -
Vian4g01655 671 SMART LRR_sd22_2 516 537 - -
Vian4g01655 671 SMART LRR_sd22_2 538 559 - -
Vian4g01655 671 SMART LRR_sd22_2 493 515 - -
Vian4g01655 671 PANTHER NISCHARIN RELATED 212 627 - -
Vian4g01655 671 SMART LRR_typ_2 449 471 IPR003591 -
Vian4g01655 671 SMART LRR_typ_2 493 516 IPR003591 -
Vian4g01655 671 SMART LRR_typ_2 538 560 IPR003591 -
Vian4g01655 671 MobiDBLite consensus disorder prediction 76 95 - -
Vian4g01655 671 SUPERFAMILY Outer arm dynein light chain 1 440 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01655 Vian-Chr4 32498190 32500651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01655 444 570 Receptor kinase-like Gene Family AT4G08850 34.058 3.66e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01655 - - gmx:100813969 1068.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01655 4 32498190 32500651 Vian4g01655 4 32498190 32500651 ECH
Vian7g00008 7 614198 616427 Vian4g01655 4 32498190 32500651 PCT