Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00004 ATGTCAGGAGGAGGATGCAGCATAGTGTGGTTTAGGAGAGATCTAAGGGTAGAGGATAATCCTGCACTGGCTGCAGGAGTTAGAGCAGGAGCTGTTGTTGCTGTTTTCATATGGGCTCCAGAAGAAGAGGGTCAATACTACCCTGGGAGGGTCTCTAGGTGGTGGCTCAAACAAAGTTTGGCTCACCTTGATTCCTCTTTGAGAAGCCTTGGCACTCCCCTTATCACCAAGCGTTCCACTAATAGTGTTTCTTCCCTATTGGAGGTCGTTAAGTCCACTGGGGCTACTCAACTCTTTTTCAACCATTTATATGATCCATTGTCACTTGTGAGGGATCACCGAGCAAAGGAGGTTCTGACTGCACAAGGCATTACCGTCCGTTCATTCAACTCAGACTTATTGTATGAACCATGGGATGTGAATGACGCTCATGGCCAACCATTCACAACTTTTTCTGCTTTTTGGGAAAGATGCCTCAGCATGCCTTATGACCCACAAGCACCTCTTCTCCCACCTAAAAGAATTATTCCAGGTGATGCTTCAAGGTGCCCTTGTGATATGTTGGTGTTTGAAGACGATTTAGAGAAGGCAAGCAATGCGCTTCTTTCTCGAGCATGGTCACCGGGGTGGAGCAATGCTGACAAGGCATTGACGGCATTCATAAACGGTCCTCTGATTGAATACTCAAAGAATCGTAGGAAGGCTGATAGTGCCACAACCTCATTTCTCTCTCCACATTTGCATTTTGGTGAGGTGAGTGTAAAGAAAGTGTTCCATCTTGTCCGCATTAAGCAAGTGTTTTGGGCCAATGAAGGAAACAAGGCTGGTGAAGAGAGTGTGAACTTGTTTCTCAAGTCTATTGGTCTTAGAGAGTATTCAAGGTACATCAGTTTCAACCACCCCTACAGTCATGAGAGGCCCCTTCTAGGACACCTTAAGTTTTTCCCTTGGGTGGTGAATGAAGGCTACTTCAAGGCTTGGAGACAAGGCAGAACAGGGTACCCTTTGGTGGATGCTGGAATGAGAGAGTTGTGGGCAACTGGTTGGTTGCATGATCGGATACGTGTTGTGGTTTCAAGTTTCTTTGTGAAGGTGCTTCAGCTTCCTTGGAGATGGGGAATGAAGTATTTCTGGGATACCCTTTTGGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATATCTGGTACTCTCCCTGATGGTCGCGAATTTGATCGAATAGATAATCCACAGTTTGAGGGGTATAAGTGTGATCCAAATGGAGAATATGTTCGACGCTGGCTTCCTGAACTTGCTAGATTACCAACTGAATGGATACACCATCCGTGGAATGCACCAGAGTATGTACTACAAGCTGCTGGAATTGAACTTGGTTCAAATTATCCTCTTCCCATTGTAGGAATAGATGCTGCAAAAGTTAGACTGCAAGAAGCACTTATACAAATGTGGCAACAAGAAGCAGCTTCAAGAGCTGCAATTGAAAATGGAACGGAGGAAGGGCTTGGAGACTCATCTGAATCAGCCCCTATTGCTTTTCCTCAAGACACACACATGGAAGAAAGACTTGCTGAACCTGTTAGGAACAACCCACCTCATGGTACTCGGCGCTACGAGGATCAGATGGTCCCAAGTATGACTGCTTCCCATGTGAGAGTGGAAGAGGAAGAAACATCTTCAGACCTTCGAAACTCAGCAGCAGACAACAGAGCCGAAGTTCCTACAAATGTGACCACACAAGAAAATGCCAGAGAGACAGTGAATCAAGGAGGGCTGCTGAATGTAAATAGAAACACTCGAGTACAGAATAATGCTACTGAAATGTGGCTGAGAAATGCGGCTGAAGATTCCACAGCAGAATCGTCAAGTAGTACTAGGAGAGAAAGGGATGGGGGTGTAGTTCCAGTTTGGTCTCCCCCAGCATCTAACTTCTCAGAACAATTTGTAGATGATGAAAATGGTATTGGAGCCAGTTCATCATACTTGCAGAGGCAGCATCCTCAGTCCCATCAATTGATGAACTGGACGCGGCTACCTCAGACTGGGTGA 2052 0.46 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKQSLAHLDSSLRSLGTPLITKRSTNSVSSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLPPKRIIPGDASRCPCDMLVFEDDLEKASNALLSRAWSPGWSNADKALTAFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPEYVLQAAGIELGSNYPLPIVGIDAAKVRLQEALIQMWQQEAASRAAIENGTEEGLGDSSESAPIAFPQDTHMEERLAEPVRNNPPHGTRRYEDQMVPSMTASHVRVEEEETSSDLRNSAADNRAEVPTNVTTQENARETVNQGGLLNVNRNTRVQNNATEMWLRNAAEDSTAESSSSTRRERDGGVVPVWSPPASNFSEQFVDDENGIGASSSYLQRQHPQSHQLMNWTRLPQTG 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00004 683 Gene3D HUPs 8 206 IPR014729 -
Vian7g00004 683 Pfam FAD binding domain of DNA photolyase 283 480 IPR005101 -
Vian7g00004 683 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 192 488 IPR036134 -
Vian7g00004 683 Gene3D - 134 293 - -
Vian7g00004 683 Pfam DNA photolyase 7 163 IPR006050 -
Vian7g00004 683 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Vian7g00004 683 FunFam Deoxyribodipyrimidine photo-lyase 301 490 - -
Vian7g00004 683 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Vian7g00004 683 MobiDBLite consensus disorder prediction 641 683 - -
Vian7g00004 683 NCBIfam cryptochrome photoreceptor 6 481 IPR014134 GO:0009785|GO:0009882
Vian7g00004 683 PANTHER CRYPTOCHROME 6 490 IPR002081 -
Vian7g00004 683 MobiDBLite consensus disorder prediction 521 536 - -
Vian7g00004 683 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Vian7g00004 683 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
Vian7g00004 683 MobiDBLite consensus disorder prediction 613 683 - -
Vian7g00004 683 FunFam Cryptochrome 1 8 148 - -
Vian7g00004 683 Pfam Blue/Ultraviolet sensing protein C terminal 510 627 IPR020978 -
Vian7g00004 683 MobiDBLite consensus disorder prediction 521 540 - -
Vian7g00004 683 PRINTS DNA photolyase signature 352 370 IPR002081 -
Vian7g00004 683 PRINTS DNA photolyase signature 332 348 IPR002081 -
Vian7g00004 683 PRINTS DNA photolyase signature 391 405 IPR002081 -
Vian7g00004 683 PRINTS DNA photolyase signature 143 159 IPR002081 -
Vian7g00004 683 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00004 Vian-Chr7 354349 358386 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00004 K12118 - gmx:100815428 1311.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00004 7 354349 358386 Vian7g00004 7 354349 358386 ECH
Vian7g00004 7 354349 358386 Vian4g01651 4 32426790 32440846 PCT