Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01651 ATGAGAGGTGGTGGTGGATGCAGCATAGTTTGGTTCAGAAGAGATCTGAGGGTGGAAGACAACCCTGCACTGGCGGCAGGAGTAAGAGCTGGAGCCGTGGTTGCAGTTTTCATCTGGGCACCCGAAGAAGAAGGCCAATACTACCCCGGCAGAGTCTCCAGGTGGTGGCTCAAACAAAGCTTGGTTCATCTTGATTCTTCTCTCAGGAATCTTGGCACTCGTCTCGTCACTAAGCGATCCACTGATACTGTTTCTTCTCTCCTCGAGGTTGTTAAATCCACTGGAGCCACTCAACTCTTTTTTAATCATTTATATGATCCCCTGTCGCTTGTAAGGGATCACCGAGCAAAAGAGGTTCTGAATGCTCAGGGCATAACAGTACGTTCCTTCAACGCTGATTTACTGTATGAACCGTGGGATGTGAATGATGTCCATGGTCGACCCTTCACAACTTTTGCGGCTTTTTGGGACAGATGTCTTAGCATGCCTTATGACCCAGACTCACCTCTTCTTCCACCTAAAAGGATAATTCCAGGTGATGTGTCGAGATGCCCCAGTGACACATTGGTGTTTGAAGATGAATCAGAGAAGGCAAGCAATGCACTTCTTGCTAGAGCATGGTCACCGGGGTGGAGCAATGCTAACAAGGCATTGACAGCATTCATAAATGGTCCACTGATAGAGTACTCAATAAATTGCAGAAAGGCTGACAGTGCCACTACCTCACTTCTCTCACCCCATTTGCATTTTGGTGAGCTGAGTGTGAAGAAGGTCTTCCATCTTGCCCGCATCAAACAACTTCTGTGGGCCAACGAAGGAAACAAGGCCAGTGAAGAGAGTGTGAACTTGTTCCTTAAATCTATTGGTCTCAGAGAATATTCGAGGTACATTAGTTTCAACCACCCCTACAGTCATGAAAGGCCTCTTCTAGGCCACCTTAAGTTCTTTCCTTGGGTTGTAAATGAGGGTTGTTTTAAGGCATGGAGACAAGGCAGAACTGGGTACCCTTTGGTGGATGCAGGGATGAGGGAGTTGTGGGCCACTGGTTGGCTGCATGATCGGATACGTGTTGTAGTTTCCAGTTTCTTTGTGAAGGTTCTGCAGCTTCCTTGGAGATGGGGAATGAAATATTTCTGGGACACCCTTTTGGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATATCTGGCACACTCCCTGATGGTCGTCAATTTGACCGAATAGATCATCCACAGTTTGAGGGCTATAAATTCGACCCAAATGGAGAATATGTGCGACGCTGGCTTCCAGAACTTGCAAGGTTACCTACTGAGTGGATTCATCATCCTTGGAATGCACCAGAATCAGTGCTCCAAGCTGCTGGAATTGAGCTAGGAACCAACTACCCTCTTCCAATTGTGGGAATAGATGCAGCAAAAACTAGATTACAAGAGGCACTATCAGAAATGTGGCAACAAGAGGCTGCTTCAAGAGCTGCAATGGAAAACGGAACTGAGGAAGGACTTGGAGACTCCTCTGAATCAATTCCTGCTGCATTTCCTCAAGACACGCAAATGGAGGAAACTCATGAACCTGTTAGGAACAATCCCTTTCCTGTTGGTCGGCGTTACCTGGATCAGATGGTTCCAAGCATCACTTCCACCCTTCTGAGAATAGAAGAGGAAGAAACTACTTCTGATCTTCGAAACTCAGCAGAAGAGAACAGCAGAGCTGAAGTGCCAATAAATGTAGATGCACAACAGAATGCAGGAGTTACATTGAACGAACGGATCTTGCAGACTGCTCACAGGAATACACAAGTACAAAACAATACTACAATGGAGCTGAGAAACGTAGCTGAAGATTCTAGCATAGAATCTTCAAGTGGTACCAGGAGAGAACGGGATGGAGGTGTAGTTCCAGTATGGTCTCCCCCAGCTTCCAGTTACTCAGAACAATTTGTGGGAGATGAAAATGGTATTACAAGTGGTTCCTCGTACTTGCAAAGGCATCCTCGGTCTCACCAATTACTGAATTGTAGACAGCTACCTCAGACCGGGTTTGTGGCCTCATTATTGATTTGTGGTGTGCATTGTGCATTGGATTTGCCTTTCGATTTTGATGCTCGGGCTCAAAAAGTGGTGGCATGGTTGTTGACGAATGGTAGTTTGATGGATTCTGCTGCTAGTGGCTCCCCCGCGCCCCCGGGTCTCGCCAGATTCCCTCTAGTACCCACTGGGATACGTCGGTGCGGTTCCCCACCGGTCTACGACGTAGCAATTGAGTCTTCTCTACAATTGGCGCCAAAGCTTTCTGGAAAACTCGGGGGAGTTGTTGGAAAAGGGAGTTATCTGCTCTGCGATGATTGTTATGTGAAGAGGGTTAATCCAAAGGTGAGGATTGTTAGGGTGGAGCCCTCTGATGCAAATGCAATGGCGTTGTCATTCCATCATCATCAAAGAGTGATTTTGGACCAGGTTGGAGGATTTGCAGATGGTGTGGCTGTTGGGATTTGCACCTAA 2508 0.4713 MRGGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKQSLVHLDSSLRNLGTRLVTKRSTDTVSSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLNAQGITVRSFNADLLYEPWDVNDVHGRPFTTFAAFWDRCLSMPYDPDSPLLPPKRIIPGDVSRCPSDTLVFEDESEKASNALLARAWSPGWSNANKALTAFINGPLIEYSINCRKADSATTSLLSPHLHFGELSVKKVFHLARIKQLLWANEGNKASEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGCFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRQFDRIDHPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGTNYPLPIVGIDAAKTRLQEALSEMWQQEAASRAAMENGTEEGLGDSSESIPAAFPQDTQMEETHEPVRNNPFPVGRRYLDQMVPSITSTLLRIEEEETTSDLRNSAEENSRAEVPINVDAQQNAGVTLNERILQTAHRNTQVQNNTTMELRNVAEDSSIESSSGTRRERDGGVVPVWSPPASSYSEQFVGDENGITSGSSYLQRHPRSHQLLNCRQLPQTGFVASLLICGVHCALDLPFDFDARAQKVVAWLLTNGSLMDSAASGSPAPPGLARFPLVPTGIRRCGSPPVYDVAIESSLQLAPKLSGKLGGVVGKGSYLLCDDCYVKRVNPKVRIVRVEPSDANAMALSFHHHQRVILDQVGGFADGVAVGICT 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01651 835 Coils Coil 471 491 - -
Vian4g01651 835 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 195 489 IPR036134 -
Vian4g01651 835 PANTHER CRYPTOCHROME 7 491 IPR002081 -
Vian4g01651 835 NCBIfam cryptochrome photoreceptor 7 483 IPR014134 GO:0009785|GO:0009882
Vian4g01651 835 Pfam FAD binding domain of DNA photolyase 284 482 IPR005101 -
Vian4g01651 835 FunFam Deoxyribodipyrimidine photo-lyase 302 491 - -
Vian4g01651 835 Pfam DNA photolyase 8 163 IPR006050 -
Vian4g01651 835 ProSitePatterns DNA photolyases class 1 signature 1. 333 345 IPR018394 -
Vian4g01651 835 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 302 503 - -
Vian4g01651 835 MobiDBLite consensus disorder prediction 610 638 - -
Vian4g01651 835 Gene3D - 135 294 - -
Vian4g01651 835 ProSitePatterns DNA photolyases class 1 signature 2. 353 372 IPR018394 -
Vian4g01651 835 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 6 135 IPR006050 -
Vian4g01651 835 MobiDBLite consensus disorder prediction 492 512 - -
Vian4g01651 835 Pfam Blue/Ultraviolet sensing protein C terminal 512 627 IPR020978 -
Vian4g01651 835 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 8 179 IPR036155 -
Vian4g01651 835 PRINTS DNA photolyase signature 353 371 IPR002081 -
Vian4g01651 835 PRINTS DNA photolyase signature 392 406 IPR002081 -
Vian4g01651 835 PRINTS DNA photolyase signature 333 349 IPR002081 -
Vian4g01651 835 FunFam Cryptochrome 1 9 146 - -
Vian4g01651 835 Gene3D HUPs 9 207 IPR014729 -
Vian4g01651 835 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 774 832 IPR036052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01651 Vian-Chr4 32426790 32440846 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01651 K12118 - gmx:100797839 1284.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01651 4 32426790 32440846 Vian4g01651 4 32426790 32440846 ECH
Vian7g00004 7 354349 358386 Vian4g01651 4 32426790 32440846 PCT