Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian6g01889 | ATGGGGTTGTGCATTAAGGTTTGGTTTTGTGTACTGAGTGTGTTGGGGCTGGCAATTATGAGTGATCTTGCCAACGCTCAAGATTCACAGAAAGACTATCTGAATGGACACAACCCTGCACGATCAGATGTTGGTGTGAAAAATATAGTTTGGAATGACACAGTTGCTGCTTTTGCGCAAAAATATGCTAATGAACGTAAAGATTGTCAACTGGTTCATTCAGATGGTGGTGGCATCTACGGGGAGAATATTGCAATGAGCACCGGTGACATGAGTGTTGCAGAGGCAGTGAAATTGTGGGTGGATGAGAAACCCTTCTACGACTACACTTCCAACTCTTGTATTGGTGGAGAGTGTCTGCATTACACTCAGGTTGTTTGGAGAAAATCGGTGTATCTTGGATGTGCCAAAGTACGTTGCAACAATGGCGGCACCTTCGTCACTTGCAATTATTCTCCTCCCGGCAACTATATTGGCGAAAGACCATACTGA | 492 | 0.4451 | MGLCIKVWFCVLSVLGLAIMSDLANAQDSQKDYLNGHNPARSDVGVKNIVWNDTVAAFAQKYANERKDCQLVHSDGGGIYGENIAMSTGDMSVAEAVKLWVDEKPFYDYTSNSCIGGECLHYTQVVWRKSVYLGCAKVRCNNGGTFVTCNYSPPGNYIGERPY | 163 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian6g01889 | 163 | PRINTS | Allergen V5/Tpx-1 family signature | 146 | 159 | IPR001283 | - | |
| Vian6g01889 | 163 | PRINTS | Allergen V5/Tpx-1 family signature | 49 | 67 | IPR001283 | - | |
| Vian6g01889 | 163 | PRINTS | Allergen V5/Tpx-1 family signature | 96 | 109 | IPR001283 | - | |
| Vian6g01889 | 163 | PRINTS | Allergen V5/Tpx-1 family signature | 119 | 135 | IPR001283 | - | |
| Vian6g01889 | 163 | ProSitePatterns | CRISP family signature 2. | 146 | 157 | IPR018244 | GO:0005576 | |
| Vian6g01889 | 163 | PANTHER | CYSTEINE-RICH SECRETORY PROTEIN-RELATED | 28 | 160 | IPR001283 | - | |
| Vian6g01889 | 163 | CDD | CAP_PR-1 | 30 | 163 | - | - | |
| Vian6g01889 | 163 | Pfam | Cysteine-rich secretory protein family | 34 | 151 | IPR014044 | - | |
| Vian6g01889 | 163 | SUPERFAMILY | PR-1-like | 27 | 163 | IPR035940 | - | |
| Vian6g01889 | 163 | Gene3D | CAP | 22 | 163 | IPR035940 | - | |
| Vian6g01889 | 163 | FunFam | Putative pathogenesis-related protein 1 | 27 | 163 | - | - | |
| Vian6g01889 | 163 | SMART | SCP_3 | 28 | 159 | IPR014044 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian6g01889 | Vian-Chr6 | 36179006 | 36179497 | Dispersed/Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian6g01889 | K13449 | - | gmx:100805116 | 258.84 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vian6g01889 | 6 | 36179006 | 36179497 | Vian6g01889 | 6 | 36179006 | 36179497 | ECH | |
| Vian1g03087 | 1 | 51410640 | 51411113 | Vian6g01889 | 6 | 36179006 | 36179497 | PCT |