Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03087 ATGAAGACATCAAGTCTTGTGTTGATCCTCACCTTTATCTCAATGTGCAGCATTTGCTTCGCACAGAATTCTCCGAAAGATTACCTTGACGAGCACAACAAAGCTCGTAAAGAGGTTGGTGTTAAACCACTGAAATGGAACGAAACCCTTGTGGCCTATGGACAGAAATACGTGAACTCGAAGAAAAAAACCTGCGAATTTGAGCATTCTATGGGGCCTTATGGGGAGAACTTGGCGCAGGGTTATGGTGAATTTAGTGGTGTAGACTCGGTGAAAATGTGGGTGGGAGAGAAGCCGAATTATGATGAGAAGAACAACAAGTGTGTTAAGGACGAATGTTTGCATTACACTCAGGTGGTTTGGAACACCACAGAAAGTGTTGGATGTGCTAGAACCAAATGTGACAATAACTGGATGTTTATCATCTGCAACTATTACCCTCCAGGCAATTACATCGGCTCACGACCTTACTAA 474 0.4325 MKTSSLVLILTFISMCSICFAQNSPKDYLDEHNKARKEVGVKPLKWNETLVAYGQKYVNSKKKTCEFEHSMGPYGENLAQGYGEFSGVDSVKMWVGEKPNYDEKNNKCVKDECLHYTQVVWNTTESVGCARTKCDNNWMFIICNYYPPGNYIGSRPY 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03087 157 ProSitePatterns CRISP family signature 2. 140 151 IPR018244 GO:0005576
Vian1g03087 157 SUPERFAMILY PR-1-like 22 157 IPR035940 -
Vian1g03087 157 SMART SCP_3 23 153 IPR014044 -
Vian1g03087 157 FunFam Putative pathogenesis-related protein 1 22 157 - -
Vian1g03087 157 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 27 154 IPR001283 -
Vian1g03087 157 CDD CAP_PR-1 25 157 - -
Vian1g03087 157 Gene3D CAP 22 157 IPR035940 -
Vian1g03087 157 PRINTS Allergen V5/Tpx-1 family signature 90 103 IPR001283 -
Vian1g03087 157 PRINTS Allergen V5/Tpx-1 family signature 44 62 IPR001283 -
Vian1g03087 157 PRINTS Allergen V5/Tpx-1 family signature 113 129 IPR001283 -
Vian1g03087 157 PRINTS Allergen V5/Tpx-1 family signature 140 153 IPR001283 -
Vian1g03087 157 Pfam Cysteine-rich secretory protein family 29 145 IPR014044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03087 Vian-Chr1 51410640 51411113 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03087 K13449 - sspl:121744069 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03087 1 51410640 51411113 Vian1g03087 1 51410640 51411113 ECH
Vian1g03087 1 51410640 51411113 Vian6g01889 6 36179006 36179497 PCT