Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01812 ATGCAGCGTTTACCCAAGATGATGACTAAAATCGGTGGTCCGGTATGCGACGTCTTCATCAACCACCGTGGGATCGACACCAAGAGGAACGTTGCCGGGCTGTTGTACGATAATCTTACGAGGATTGGAGTGAGGGCATTCTTGGACAGCATGAACATGAAACCCGGGGACAGGCTTTTCCAACACATTGATAGAGGCATTCTGGGTTGCAAGGTTGGTGTTACCGTCTTCTCTCCTCGCTACTGTGACTCCTATTTCTGCCTCCACGAGCTCGCTCTTCTCATGGAGTCCAACAAAAGGGTCGTTCCCATTTTCTACGACGTCAAACCCTCGCAACTTACGGTCAAGGACAACGGAACCTGCCCTCCCGCGGACCTTCAGAGGTTCGCCTTTGCACTTGAAGACGCAAAGAACACCGTGGGATTGACGTTTAATTCTTTGAACGGGGATTGGTCGGAGTTGCTGAGGAATGCTTCGGAAGCGGTGATCATGAACTTGTTGGAGGTAAAGGAAGAAAGGAAGTACGCGAAGAAGCAGCGTTGA 543 0.5083 MQRLPKMMTKIGGPVCDVFINHRGIDTKRNVAGLLYDNLTRIGVRAFLDSMNMKPGDRLFQHIDRGILGCKVGVTVFSPRYCDSYFCLHELALLMESNKRVVPIFYDVKPSQLTVKDNGTCPPADLQRFAFALEDAKNTVGLTFNSLNGDWSELLRNASEAVIMNLLEVKEERKYAKKQR 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01812 180 Pfam TIR domain 18 119 IPR000157 GO:0007165
Vian6g01812 180 SMART till_3 15 161 IPR000157 GO:0007165
Vian6g01812 180 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 141 IPR035897 -
Vian6g01812 180 Gene3D - 8 123 IPR035897 -
Vian6g01812 180 PANTHER COP1-INTERACTING PROTEIN-RELATED 16 177 - -
Vian6g01812 180 ProSiteProfiles TIR domain profile. 14 159 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01812 Vian-Chr6 35554195 35554850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01812 8 145 Miscellaneous Gene Families AT1G57670 29.412 4.90e-15 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01812 - - gmx:100806903 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01812 6 35554195 35554850 Vian6g01812 6 35554195 35554850 ECH
Vian1g03168 1 52861073 52861825 Vian6g01812 6 35554195 35554850 PCT