Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03168 ATGCAACATTTGCCAGCCAAGTTGTGCCGCAAACTGGCTCGTCCAGCATGCGATGTGTTCATAAACCATCGTGGCATCGACACCAAGAGGAACATCGCGGGGTTGCTATACGACAGTTTGACTAGGATGGAAGTGCGGTCGTTTTTGGACAGCATGAACATGAAACCTGGGGATAGGTTGTTCGATCACATCGACAGGGCCATTCTAGGTTGCAAAGTGGGTGTTACGGTGTTTTCGCCACGTTACTGTGAGTCGTATTTCTGTCTACATGAGCTCGCTCTTCTCATGGAGTCAAAGAAGAGGGTTGTGCCCATCTTCTACGACGTTAAACCTTCGCAGCTTGTGGTCAAGGACAACGGAACTTGTTCTGCTAAACAGCTTCGGAGATTCTCTTTGGCACTCGAGGAAGCTAAATACACTGTTGGATTGACCTTTGATTCTTTCAAAGGGGACTGGTCGGAGATACTGAGAGATGCTTCAGATGCAGTGATGATGAACTTACTGGAGGTAGAAGATGAGCGAAAAAACATGAAGAGAAAACAGTGA 546 0.4725 MQHLPAKLCRKLARPACDVFINHRGIDTKRNIAGLLYDSLTRMEVRSFLDSMNMKPGDRLFDHIDRAILGCKVGVTVFSPRYCESYFCLHELALLMESKKRVVPIFYDVKPSQLVVKDNGTCSAKQLRRFSLALEEAKYTVGLTFDSFKGDWSEILRDASDAVMMNLLEVEDERKNMKRKQ 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03168 181 ProSiteProfiles TIR domain profile. 15 138 IPR000157 GO:0007165
Vian1g03168 181 SMART till_3 16 162 IPR000157 GO:0007165
Vian1g03168 181 PANTHER COP1-INTERACTING PROTEIN-RELATED 14 180 - -
Vian1g03168 181 Gene3D - 13 177 IPR035897 -
Vian1g03168 181 Pfam TIR domain 18 114 IPR000157 GO:0007165
Vian1g03168 181 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 137 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03168 Vian-Chr1 52861073 52861825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03168 12 146 Miscellaneous Gene Families AT1G57670 32.000 1.28e-17 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03168 - - gmx:100798207 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03168 1 52861073 52861825 Vian6g01812 6 35554195 35554850 PCT